PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517306.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 398aa MW: 45821.5 Da PI: 9.9994

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.7	6.6e-16	14	99	8	98
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++l+ + l++pkkf+++hg+ s+ ++l+ ++g +W+v l + +++ ++l++GW +F++ L+ g +vFk dg s+f ++f+ XP_023517306.1 14 HNNLEDRKLMIPKKFVKDHGE--LLSTSVRLKLPDGMEWKVGL--TTAPNGvVWLQNGWHKFAEHYSLEFGSLLVFKSDGFSTF--QTSIFD 99 55677778*********84..58999***********..77777779**********************5554555..777776 PP
2	B3	61.7	1.2e-19	187	273	1	88
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ v+++++v + +++pk+fae+h ++l++++gr+W + ++ r++++ +++++GWk+Fv++n LkegD+ +F+l++++ XP_023517306.1 187 FKIVMKQPNVRGKFAMTIPKDFAEKHlpddF------GIIKLQTPNGRKWPLLYKRRRNQENfVYFSSGWKRFVEENVLKEGDIGLFQLIKKD 273 67789999999*************64321......26***********775444446***********************99754 PP
3	B3	42.1	1.6e-13	307	390	11	99
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k+ l +p fa+eh ++ +s +l++ + r+W v l r++++++ l++GW F +ngL++gD+++F+++++++ ++v++f++ XP_023517306.1 307 HKKFVLNIPMVFAKEHFSSDMRSAKLQVGN---RQWIVAL--RQYGSSVRLSAGWCLFYGDNGLEDGDSCLFEMVDTKNCVFKVTIFKH 390 5667799*******77767777777555...***..*****************************9987666678888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MAPSSPQFFR IVLHNNLEDR KLMIPKKFVK DHGELLSTSV RLKLPDGMEW KVGLTTAPNG 60 VVWLQNGWHK FAEHYSLEFG SLLVFKSDGF STFQTSIFDP SGVETEYCCI FNDSRAEFTM 120 EYEDSDENTE SSPLRLSKRK NKPSVPSPPQ SRKKMKPEEG VSSRRQQFVN KPEAAQRFTS 180 KSEKPIFKIV MKQPNVRGKF AMTIPKDFAE KHLPDDFGII KLQTPNGRKW PLLYKRRRNQ 240 ENFVYFSSGW KRFVEENVLK EGDIGLFQLI KKDIFSFTKL QDTSPFPSPA TNTRNPCFEA 300 NILNRRHKKF VLNIPMVFAK EHFSSDMRSA KLQVGNRQWI VALRQYGSSV RLSAGWCLFY 360 GDNGLEDGDS CLFEMVDTKN CVFKVTIFKH VSSSASMD

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MAPSSPQFFR IVLHNNLEDR KLMIPKKFVK DHGELLSTSV RLKLPDGMEW KVGLTTAPNG  60
VVWLQNGWHK FAEHYSLEFG SLLVFKSDGF STFQTSIFDP SGVETEYCCI FNDSRAEFTM  120
EYEDSDENTE SSPLRLSKRK NKPSVPSPPQ SRKKMKPEEG VSSRRQQFVN KPEAAQRFTS  180
KSEKPIFKIV MKQPNVRGKF AMTIPKDFAE KHLPDDFGII KLQTPNGRKW PLLYKRRRNQ  240
ENFVYFSSGW KRFVEENVLK EGDIGLFQLI KKDIFSFTKL QDTSPFPSPA TNTRNPCFEA  300
NILNRRHKKF VLNIPMVFAK EHFSSDMRSA KLQVGNRQWI VALRQYGSSV RLSAGWCLFY  360
GDNGLEDGDS CLFEMVDTKN CVFKVTIFKH VSSSASMD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-33	B3 family protein