PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516986.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1378aa MW: 151411 Da PI: 7.7496

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	973	1013	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av+ +G++ ++ I+ ++g ++ qck ++ XP_023516986.1 973 YWTDGEKSLFIEAVTVYGKN-FSMISTHVG-SKSMDQCKVFFS 1013 5***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1378 aa Download sequence
MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG 60 GWHVFSDDCG HGYGPSMSFN NKILENVSSR PSISHGHGKY ARNSRESRSF SQRDWKSHSW 120 ATSNGSTNNG GRLQHDLNYD QRSVHDMLIY PSHSHSDFVN PRDKVKGQHD KIDDFNGLGT 180 NQRRDRDYSV SSSGWKPLKW TRSGGLSSRT STSGHSSSTK GIDALDSNET KSEAVLQNAS 240 QNLSPSADHA ECARSSLPCD EANAKKKPRL GWGEGLAKYE KKKVEIPDGT VFTIVNAEAT 300 QSLNSSLIDK GPRGSGFFDC TSPATPSSVI CGSSPGGDEK SSGKASSDND VNNFGSPGSG 360 FQNQYEGSPA SNLEKLDRFS IPNLGSPLSQ LLQSTDSTSV DSCVVSFTAL SKLLAYKKEI 420 SKVLEMTETE IDLLENELMG LRSGSKGYFS SFPLASSSLP VGDKCFEEHS NVTDMIPPVA 480 TLPVVTSTNN NSITMPHSTS DSEEVHADVK ENDQSDAKES VIMKEKLTLT GCSVEDNVVA 540 SVDNNMLIKS EGLALEPISS DMYEYADEGG DNVFDLILAS NKKSAREASE ALIRLLPANE 600 RKIDIWITNA CSRNQCSMKE RFAKRKKLLR FKERVIALKF RAYQSLWKES LHVPPVRNLR 660 TKSQKKYQLS LWTNYSAYQK NRSSIRFRMP SPGNLNPVSN TEILKHVSKQ LSNPQTKQYR 720 KALKMPTLIL DKKDKMASRF ISNNGLVEDP CAVEKERMMI NPWTSEEKDV FMEKLEYFGK 780 DFGKIASFLD HKTTADCIEF YYKNHKSDCF EKTKKLEFGK KAKSSTGNYL MTTGKKWNPE 840 TNAASLDILG AASAMTACAH KYSSSRSGGR TACYTTQFDD NLSERAKSFH SFGNEREKVA 900 ADVLAGICGS LSSEAMGSSC ITGNFHRRDG SQDLKCKKGA TTILRRRMTA NLLQSVDDEV 960 CSDESCGEMD PSYWTDGEKS LFIEAVTVYG KNFSMISTHV GSKSMDQCKV FFSKARKCLG 1020 LDLICSAKKM PANGRDCNAN GCCGEAGVDR NAFPCEGVGN GGELESMNPQ STHQEVKEIN 1080 SHSNTAVDAM VSDVCHRKDS SHSALDEDCQ SVNSANDKNR SLHNHAVVSD ETAKEQGNSS 1140 RVTVSVGNGL DAETKRGNID TSTGQGAKAP AHTADSSLAP LNSHVTSVPK DEQGRLHVRV 1200 RSRSLSDSEQ LSINGDVKLF GQILTHSSSV PSSSSNGNRT QHHKFKRRLK ASSHGNLSTA 1260 KFSRKSSSGQ EDVPSRSYGI WDGTQMRNGL SSLPDPTTLL SRYPTFDNFS KSTSPIEQQQ 1320 PILNEQKSNC DSQMSEVNSS KVAQEVVGGI IVGEICNDDD DDALDTKLHC NKAEDGGS

Sequence ? help Back to Top

Protein Sequence Length: 1378 aa Download sequence

MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG  60
GWHVFSDDCG HGYGPSMSFN NKILENVSSR PSISHGHGKY ARNSRESRSF SQRDWKSHSW  120
ATSNGSTNNG GRLQHDLNYD QRSVHDMLIY PSHSHSDFVN PRDKVKGQHD KIDDFNGLGT  180
NQRRDRDYSV SSSGWKPLKW TRSGGLSSRT STSGHSSSTK GIDALDSNET KSEAVLQNAS  240
QNLSPSADHA ECARSSLPCD EANAKKKPRL GWGEGLAKYE KKKVEIPDGT VFTIVNAEAT  300
QSLNSSLIDK GPRGSGFFDC TSPATPSSVI CGSSPGGDEK SSGKASSDND VNNFGSPGSG  360
FQNQYEGSPA SNLEKLDRFS IPNLGSPLSQ LLQSTDSTSV DSCVVSFTAL SKLLAYKKEI  420
SKVLEMTETE IDLLENELMG LRSGSKGYFS SFPLASSSLP VGDKCFEEHS NVTDMIPPVA  480
TLPVVTSTNN NSITMPHSTS DSEEVHADVK ENDQSDAKES VIMKEKLTLT GCSVEDNVVA  540
SVDNNMLIKS EGLALEPISS DMYEYADEGG DNVFDLILAS NKKSAREASE ALIRLLPANE  600
RKIDIWITNA CSRNQCSMKE RFAKRKKLLR FKERVIALKF RAYQSLWKES LHVPPVRNLR  660
TKSQKKYQLS LWTNYSAYQK NRSSIRFRMP SPGNLNPVSN TEILKHVSKQ LSNPQTKQYR  720
KALKMPTLIL DKKDKMASRF ISNNGLVEDP CAVEKERMMI NPWTSEEKDV FMEKLEYFGK  780
DFGKIASFLD HKTTADCIEF YYKNHKSDCF EKTKKLEFGK KAKSSTGNYL MTTGKKWNPE  840
TNAASLDILG AASAMTACAH KYSSSRSGGR TACYTTQFDD NLSERAKSFH SFGNEREKVA  900
ADVLAGICGS LSSEAMGSSC ITGNFHRRDG SQDLKCKKGA TTILRRRMTA NLLQSVDDEV  960
CSDESCGEMD PSYWTDGEKS LFIEAVTVYG KNFSMISTHV GSKSMDQCKV FFSKARKCLG  1020
LDLICSAKKM PANGRDCNAN GCCGEAGVDR NAFPCEGVGN GGELESMNPQ STHQEVKEIN  1080
SHSNTAVDAM VSDVCHRKDS SHSALDEDCQ SVNSANDKNR SLHNHAVVSD ETAKEQGNSS  1140
RVTVSVGNGL DAETKRGNID TSTGQGAKAP AHTADSSLAP LNSHVTSVPK DEQGRLHVRV  1200
RSRSLSDSEQ LSINGDVKLF GQILTHSSSV PSSSSNGNRT QHHKFKRRLK ASSHGNLSTA  1260
KFSRKSSSGQ EDVPSRSYGI WDGTQMRNGL SSLPDPTTLL SRYPTFDNFS KSTSPIEQQQ  1320
PILNEQKSNC DSQMSEVNSS KVAQEVVGGI IVGEICNDDD DDALDTKLHC NKAEDGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-125	MYB family protein