PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516976.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1379aa MW: 151482 Da PI: 7.7496

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	974	1014	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av+ +G++ ++ I+ ++g ++ qck ++ XP_023516976.1 974 YWTDGEKSLFIEAVTVYGKN-FSMISTHVG-SKSMDQCKVFFS 1014 5***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1379 aa Download sequence
MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG 60 GWHVFSDDCG HGYGPSMSFN NKILENVSSR PSISHGHGKY ARNSRESRSF SQRDWKSHSW 120 ATSNGSTNNG GRLQHDLNYD QRSVHDMLIY PSHSHSDFVN PRDKVKGQHD KIDDFNGLGT 180 NQRRDRDYSV SSSGWKPLKW TRSGGLSSRT STSGHSSSTK GIDALDSNET KSEAVLQNAS 240 QNLSPSADHA ECARSSLPCD EANAKKKPRL GWGEGLAKYE KKKVEIPDGT VFTIVNAEAT 300 QSLNSSLIDK GPRGSGFFDC TSPATPSSVI CGSSPGGDEK SSGKASSDND VNNFGSPGSG 360 FQNQYEGSPA SNLEKLDRFS IPNLGSPLSQ LLQSTDSTSV DSCVVSFTAL SKLLAYKKEI 420 SKVLEMTETE IDLLENELMG LRSGSKGYFS SFPLASSSLP VGDKCFEEHS NVTDMIPPVA 480 TLPVVTSTNN NSITMPHSTS DSEEVHADVK ENDQSDAKES VIMKEKLTLT GCSVEDNVVA 540 SVDNNMLIKS EGLALEPISS DMYEYADEGG DNVFDLILAS NKKSAREASE ALIRLLPANE 600 RKIDIWITNA CSRNQCSMKE RFAKRKKLLR FKERVIALKF RAYQSLWKES LHVPPVRNLR 660 TKSQKKYQLS LWTNYSAYQK NRSSIRFRMP SPAGNLNPVS NTEILKHVSK QLSNPQTKQY 720 RKALKMPTLI LDKKDKMASR FISNNGLVED PCAVEKERMM INPWTSEEKD VFMEKLEYFG 780 KDFGKIASFL DHKTTADCIE FYYKNHKSDC FEKTKKLEFG KKAKSSTGNY LMTTGKKWNP 840 ETNAASLDIL GAASAMTACA HKYSSSRSGG RTACYTTQFD DNLSERAKSF HSFGNEREKV 900 AADVLAGICG SLSSEAMGSS CITGNFHRRD GSQDLKCKKG ATTILRRRMT ANLLQSVDDE 960 VCSDESCGEM DPSYWTDGEK SLFIEAVTVY GKNFSMISTH VGSKSMDQCK VFFSKARKCL 1020 GLDLICSAKK MPANGRDCNA NGCCGEAGVD RNAFPCEGVG NGGELESMNP QSTHQEVKEI 1080 NSHSNTAVDA MVSDVCHRKD SSHSALDEDC QSVNSANDKN RSLHNHAVVS DETAKEQGNS 1140 SRVTVSVGNG LDAETKRGNI DTSTGQGAKA PAHTADSSLA PLNSHVTSVP KDEQGRLHVR 1200 VRSRSLSDSE QLSINGDVKL FGQILTHSSS VPSSSSNGNR TQHHKFKRRL KASSHGNLST 1260 AKFSRKSSSG QEDVPSRSYG IWDGTQMRNG LSSLPDPTTL LSRYPTFDNF SKSTSPIEQQ 1320 QPILNEQKSN CDSQMSEVNS SKVAQEVVGG IIVGEICNDD DDDALDTKLH CNKAEDGGS

Sequence ? help Back to Top

Protein Sequence Length: 1379 aa Download sequence

MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG  60
GWHVFSDDCG HGYGPSMSFN NKILENVSSR PSISHGHGKY ARNSRESRSF SQRDWKSHSW  120
ATSNGSTNNG GRLQHDLNYD QRSVHDMLIY PSHSHSDFVN PRDKVKGQHD KIDDFNGLGT  180
NQRRDRDYSV SSSGWKPLKW TRSGGLSSRT STSGHSSSTK GIDALDSNET KSEAVLQNAS  240
QNLSPSADHA ECARSSLPCD EANAKKKPRL GWGEGLAKYE KKKVEIPDGT VFTIVNAEAT  300
QSLNSSLIDK GPRGSGFFDC TSPATPSSVI CGSSPGGDEK SSGKASSDND VNNFGSPGSG  360
FQNQYEGSPA SNLEKLDRFS IPNLGSPLSQ LLQSTDSTSV DSCVVSFTAL SKLLAYKKEI  420
SKVLEMTETE IDLLENELMG LRSGSKGYFS SFPLASSSLP VGDKCFEEHS NVTDMIPPVA  480
TLPVVTSTNN NSITMPHSTS DSEEVHADVK ENDQSDAKES VIMKEKLTLT GCSVEDNVVA  540
SVDNNMLIKS EGLALEPISS DMYEYADEGG DNVFDLILAS NKKSAREASE ALIRLLPANE  600
RKIDIWITNA CSRNQCSMKE RFAKRKKLLR FKERVIALKF RAYQSLWKES LHVPPVRNLR  660
TKSQKKYQLS LWTNYSAYQK NRSSIRFRMP SPAGNLNPVS NTEILKHVSK QLSNPQTKQY  720
RKALKMPTLI LDKKDKMASR FISNNGLVED PCAVEKERMM INPWTSEEKD VFMEKLEYFG  780
KDFGKIASFL DHKTTADCIE FYYKNHKSDC FEKTKKLEFG KKAKSSTGNY LMTTGKKWNP  840
ETNAASLDIL GAASAMTACA HKYSSSRSGG RTACYTTQFD DNLSERAKSF HSFGNEREKV  900
AADVLAGICG SLSSEAMGSS CITGNFHRRD GSQDLKCKKG ATTILRRRMT ANLLQSVDDE  960
VCSDESCGEM DPSYWTDGEK SLFIEAVTVY GKNFSMISTH VGSKSMDQCK VFFSKARKCL  1020
GLDLICSAKK MPANGRDCNA NGCCGEAGVD RNAFPCEGVG NGGELESMNP QSTHQEVKEI  1080
NSHSNTAVDA MVSDVCHRKD SSHSALDEDC QSVNSANDKN RSLHNHAVVS DETAKEQGNS  1140
SRVTVSVGNG LDAETKRGNI DTSTGQGAKA PAHTADSSLA PLNSHVTSVP KDEQGRLHVR  1200
VRSRSLSDSE QLSINGDVKL FGQILTHSSS VPSSSSNGNR TQHHKFKRRL KASSHGNLST  1260
AKFSRKSSSG QEDVPSRSYG IWDGTQMRNG LSSLPDPTTL LSRYPTFDNF SKSTSPIEQQ  1320
QPILNEQKSN CDSQMSEVNS SKVAQEVVGG IIVGEICNDD DDDALDTKLH CNKAEDGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-125	MYB family protein