PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516932.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 561aa MW: 61233.8 Da PI: 7.9976

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516932.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.1	5.7e-17	258	307	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr l+P++ ++K +Ka+ L ++v+YI+ Lq XP_023516932.1 258 RSKHSATEQRRRSKINDRFQMLRGLIPHS----DQKRDKASFLLEVVDYIQFLQ 307 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MELPQPRPFG AEGSKSTHDF LSLYTHSSPQ LDPRPSQQGG YLKTHDFLQP QERIRKGSTK 60 EEADVETPPP PAPPPSVEHV LPGGIGTYSI SHVSYLDQRV LPKPEGSVFT GARSSSSAER 120 NDENSNGSSF AAGGSGFTLW EECASKKGKT GKENIVGDRP HEPRASASQW TASVDRPSQS 180 SSNNHHNAFC CLSSSQPTGT KNPTFMEMLK SAKSTSQDEE LDDDGDFVIK KETSTANKGG 240 LRIKVDGNSS DQKANTPRSK HSATEQRRRS KINDRFQMLR GLIPHSDQKR DKASFLLEVV 300 DYIQFLQEKV QKYEGSYQEW NREMAKLVPL RNNQRSADVY NDQSRGMSSG SVPALVLAAK 360 FVEKNTPLSP IVPGSSHNVV DSDTGSASTL KAVDRHSGRT SNALPFPTIV PPKLYASTRD 420 GSVVPQHPKQ FASETDHPSL RPQIRSCEAR CHNSDVAVAS EMQKEQDLTI EGGTINISSV 480 YSQGLLNTLT HALQSSGVDL SQARISVQIE LGKRATRRAV SPTSIDKDVD IPINDMATTH 540 SRASATEDSE RTTKKLKTAE S

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MELPQPRPFG AEGSKSTHDF LSLYTHSSPQ LDPRPSQQGG YLKTHDFLQP QERIRKGSTK  60
EEADVETPPP PAPPPSVEHV LPGGIGTYSI SHVSYLDQRV LPKPEGSVFT GARSSSSAER  120
NDENSNGSSF AAGGSGFTLW EECASKKGKT GKENIVGDRP HEPRASASQW TASVDRPSQS  180
SSNNHHNAFC CLSSSQPTGT KNPTFMEMLK SAKSTSQDEE LDDDGDFVIK KETSTANKGG  240
LRIKVDGNSS DQKANTPRSK HSATEQRRRS KINDRFQMLR GLIPHSDQKR DKASFLLEVV  300
DYIQFLQEKV QKYEGSYQEW NREMAKLVPL RNNQRSADVY NDQSRGMSSG SVPALVLAAK  360
FVEKNTPLSP IVPGSSHNVV DSDTGSASTL KAVDRHSGRT SNALPFPTIV PPKLYASTRD  420
GSVVPQHPKQ FASETDHPSL RPQIRSCEAR CHNSDVAVAS EMQKEQDLTI EGGTINISSV  480
YSQGLLNTLT HALQSSGVDL SQARISVQIE LGKRATRRAV SPTSIDKDVD IPINDMATTH  540
SRASATEDSE RTTKKLKTAE S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-103	bHLH family protein