PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516879.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 301aa MW: 32197.4 Da PI: 9.4702

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.2e-08	102	127	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f C++Gd+C+FaHg+ XP_023516879.1 102 KTRLCNKFNSAEGCRFGDKCHFAHGE 127 8***********************96 PP
2	zf-CCCH	30.6	5.8e-10	268	293	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ GtC + +rC+FaHg+ XP_023516879.1 268 FKTKLCANFAK-GTCTFRERCHFAHGE 293 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MDIDAVRKRE RTETAFNGNG SFKKLKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF 60 AHYVPGGFKA ISQMITPALP PGNRNPVPPQ SFQDGVSPPA VKTRLCNKFN SAEGCRFGDK 120 CHFAHGEWEL GRPNPPQDHG GMGQMQQPRM GGGWNVPPPP NHGPAASFGA SATAKISVDA 180 SLAGPIIGKN GVNSKNICRM TGARLSIKEH ESDPSLKNIE LEGTFDQINL ASSMVRELIA 240 NVGAASANNA MKQHHSATQQ SSGSANNFKT KLCANFAKGT CTFRERCHFA HGESELRKPG 300 M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-79	C3H family protein