PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516820.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 563aa MW: 61925.7 Da PI: 5.8361

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7.3e-29	211	264	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr++W+ eLH++Fv+av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl XP_023516820.1 211 RPRVVWSVELHRKFVSAVNQL-GLEKAVPKKILDLMNVEGLTRENVASHLQKYRL 264 59*****************.******************************8 PP
2	Myb_DNA-binding	40.6	5.8e-13	213	263	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I m+ +g+t++++ s++qky+ XP_023516820.1 213 RVVWSVELHRKFVSAVNQLGLEkaVPKKILDLMNvEGLTRENVASHLQKYR 263 678***********************************************7 PP
3	Response_reg	82.8	1e-27	26	134	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+ +l+k +y +v++++ + eal++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ e++ + + G XP_023516820.1 26 VLAVDDDPICLKVLEHLLRKCQY-HVTTTKRSIEALKMLRENRnkVDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTELVMKGIAHG 118 799******************.***********999889***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_023516820.1 119 ACDYLLKPVRIEELKN 134 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MTVEGRSVDS AGDGGAADHF PVGMRVLAVD DDPICLKVLE HLLRKCQYHV TTTKRSIEAL 60 KMLRENRNKV DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTEL VMKGIAHGAC 120 DYLLKPVRIE ELKNIWQHVI RRKKLEPKAK NKFPNQDNVG NGGSEGEQGF SSTSNADNAK 180 LNRKRKEQDD DEDEEGKENE VDIDDPSNLK RPRVVWSVEL HRKFVSAVNQ LGLEKAVPKK 240 ILDLMNVEGL TRENVASHLQ KYRLYLKRIS NVASQQANLA ATFGSKEGTY MRIGSYDGYG 300 DMHGFAGSGR LPSSSLSYYS PAGMSLIQQS SHNLNCAISN LGSFQPAIML PPHQATNLLQ 360 GIPTSLELGH LQHSKSTTSI GEAFDIDFGC SSFLDPDPSN GNWQGAAQLL RFSATLNPNE 420 EYPIDQLQAM NSSISSAPST NRNISVVGSV SAPLLDSRDL QCQAGVGVVD SMPKQSWEEH 480 EHDYARSPLS QSFNQNSLVC ERKVGLSLIV PSNDAQLSFP QHSVVEKLGP NTKTNADRNL 540 HDGSIQGSFE SLDDMMNAMI KQV

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MTVEGRSVDS AGDGGAADHF PVGMRVLAVD DDPICLKVLE HLLRKCQYHV TTTKRSIEAL  60
KMLRENRNKV DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTEL VMKGIAHGAC  120
DYLLKPVRIE ELKNIWQHVI RRKKLEPKAK NKFPNQDNVG NGGSEGEQGF SSTSNADNAK  180
LNRKRKEQDD DEDEEGKENE VDIDDPSNLK RPRVVWSVEL HRKFVSAVNQ LGLEKAVPKK  240
ILDLMNVEGL TRENVASHLQ KYRLYLKRIS NVASQQANLA ATFGSKEGTY MRIGSYDGYG  300
DMHGFAGSGR LPSSSLSYYS PAGMSLIQQS SHNLNCAISN LGSFQPAIML PPHQATNLLQ  360
GIPTSLELGH LQHSKSTTSI GEAFDIDFGC SSFLDPDPSN GNWQGAAQLL RFSATLNPNE  420
EYPIDQLQAM NSSISSAPST NRNISVVGSV SAPLLDSRDL QCQAGVGVVD SMPKQSWEEH  480
EHDYARSPLS QSFNQNSLVC ERKVGLSLIV PSNDAQLSFP QHSVVEKLGP NTKTNADRNL  540
HDGSIQGSFE SLDDMMNAMI KQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-113	ARR-B family protein