PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516793.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 412aa MW: 43480.7 Da PI: 6.7911

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.5e-12	218	263	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_023516793.1 218 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MQPCSREMQT FNSLLNHSQI SLQDLHADAT HHLNPPPPQI PASQLHHFDP AAAASHDDFL 60 EQMLNTIPSC SWPDLNPSNP KSPWDLNPIN KPSRDISDDH HQSHITATSP AAKAAVMLQQ 120 QLLLNRGISV STGNGVADHG LPPMPLSLGN ADLDRSQNDV VEGSCFRTPN SGGSIQSHSF 180 GAPGNGMSQT PAGGSVGVSP SQPKQKVRAR RGQATDPHSI AERLRRERIA ERMKALQELV 240 PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADVSDE GGGECMQGGR 300 SSNGSGGNQT ASSNDSVTVT EQQVARLMEK DMGSAMQYLQ GKGLCLMPIS LATAISTSTC 360 HTRNPMMNGG GQHPVMGTNG EGPTSPSMSV LTVQSTSMGN GSVKDAASVS KP

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MQPCSREMQT FNSLLNHSQI SLQDLHADAT HHLNPPPPQI PASQLHHFDP AAAASHDDFL  60
EQMLNTIPSC SWPDLNPSNP KSPWDLNPIN KPSRDISDDH HQSHITATSP AAKAAVMLQQ  120
QLLLNRGISV STGNGVADHG LPPMPLSLGN ADLDRSQNDV VEGSCFRTPN SGGSIQSHSF  180
GAPGNGMSQT PAGGSVGVSP SQPKQKVRAR RGQATDPHSI AERLRRERIA ERMKALQELV  240
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADVSDE GGGECMQGGR  300
SSNGSGGNQT ASSNDSVTVT EQQVARLMEK DMGSAMQYLQ GKGLCLMPIS LATAISTSTC  360
HTRNPMMNGG GQHPVMGTNG EGPTSPSMSV LTVQSTSMGN GSVKDAASVS KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	228	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-69	bHLH family protein