PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516757.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 469aa MW: 54196.6 Da PI: 6.2697

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	196	242	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd llv++v+q+G + W+ Ia++++ gR +kqc++rw+++l XP_023516757.1 196 KGQWTIEEDRLLVQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 242 799***************************.***********97 PP
2	Myb_DNA-binding	54.2	3.3e-17	248	290	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++a+ + G++ W+ Ia++++ gRt++++k++w+ XP_023516757.1 248 KDTWSEEEDRVLIEAHSEIGNK-WAEIAKRLP-GRTENSIKNHWN 290 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MEFESSLRQN LSSQIQQVCS ENYAQICKND ELSFEIFASK GNYLQEFHNL DHFHPIGSSS 60 NHPVMEDENL CSFDPLNPYS YGCSSNNNMG IEDLYDFSKG CTTDQNGGCG QVMDNFQSCG 120 DYYYQRNQIE IMGLERNSMI PLNFQEIKPV NFIVADEVSC VTSGHGHIQK AIMNKNATFP 180 SLLRTSKVRK KPTVIKGQWT IEEDRLLVQL VEQYGVRKWS HIAQMLPGRI GKQCRERWHN 240 HLRPDIKKDT WSEEEDRVLI EAHSEIGNKW AEIAKRLPGR TENSIKNHWN ATKRRQYSKR 300 KCRSKYPRCS LLQDYIKSLN LDSVAARHQK KSSATSAVNN TKSKVTDHHH HHQAQTTEFC 360 PNDWTVPNFD FKDEPEIYLD DSFFPEGCSI NSLMEDIAGA SVDDANNYDR KRYNDNEESV 420 EFRRVEMEKS QYYAPVSTAG MVAGMEFEVK KELDLVEMMI QVNEVNNFK

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MEFESSLRQN LSSQIQQVCS ENYAQICKND ELSFEIFASK GNYLQEFHNL DHFHPIGSSS  60
NHPVMEDENL CSFDPLNPYS YGCSSNNNMG IEDLYDFSKG CTTDQNGGCG QVMDNFQSCG  120
DYYYQRNQIE IMGLERNSMI PLNFQEIKPV NFIVADEVSC VTSGHGHIQK AIMNKNATFP  180
SLLRTSKVRK KPTVIKGQWT IEEDRLLVQL VEQYGVRKWS HIAQMLPGRI GKQCRERWHN  240
HLRPDIKKDT WSEEEDRVLI EAHSEIGNKW AEIAKRLPGR TENSIKNHWN ATKRRQYSKR  300
KCRSKYPRCS LLQDYIKSLN LDSVAARHQK KSSATSAVNN TKSKVTDHHH HHQAQTTEFC  360
PNDWTVPNFD FKDEPEIYLD DSFFPEGCSI NSLMEDIAGA SVDDANNYDR KRYNDNEESV  420
EFRRVEMEKS QYYAPVSTAG MVAGMEFEVK KELDLVEMMI QVNEVNNFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-99	MYB family protein