PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516640.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 310aa    MW: 33598.5 Da    PI: 7.437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-10861347
                     SS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47
                      WT+eEd+ + +a++ +  g           W+ Ia++++ ++  +++k ++q++
   XP_023516640.1  8 TWTKEEDKAFENAIATHWAGelegnkaseeMWENIASMVP-TKNMEDLKQHYQML 61
                     6***************************************.************86 PP
2Myb_DNA-binding38.92.1e-12146190347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_023516640.1 146 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 190
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MSTGSATTWT KEEDKAFENA IATHWAGELE GNKASEEMWE NIASMVPTKN MEDLKQHYQM  60
LVEDVGAIES GQIPIPNYDS VAEEATKAST KAKDHRLHPH GATGSDSNKI PNSGLGSGFS  120
GLSHDSSAHA TKGGSRSEQE RKKGIPWTEE EHRLFLLGLD KFGKGDWRSI SRNFVISRTP  180
TQVASHAQKY FIRLNSMNRD RRRSSIHDIT SVNNAGGDVM SHQSPITGHQ TNDPNQSNPP  240
ALGPPGKHGP QQHLPGIGMY GAPVGHPVAA RPGHMASAVG TPVMLPHGIH PHPPYVMPLA  300
YPMAPPPLHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.17e-74MYB family protein