PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023516566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | ARF | ||||||||
Protein Properties | Length: 850aa MW: 94359.2 Da PI: 6.4828 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 9.7e-24 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ XP_023516566.1 149 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 240 99*****************************7333.34459************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_023516566.1 241 GELRVGVRRA 250 99*****996 PP | |||||||
2 | Auxin_resp | 120.5 | 1.3e-39 | 275 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++++GmRfkm+fe+e+++e+r++Gt++g +d+dp rW++SkWr+Lk XP_023516566.1 275 AWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLK 357 89*******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence |
MASSEVSINP NSASVPFNDH ADSTKLTSDP PNALSARDAD FALFTELWNA CAGPLVSVPR 60 ENDRVFYFPQ GHIEQVEAST SQVADQQMPV YDLPSKILCR VINVHLKAEP DTDEVFAQIT 120 LVPEANQDEH AVDKEPPPPP PRRFHVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM 180 SRQPPTQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN 240 GELRVGVRRA MRQHGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK PRTSPSEFIV 300 PYDQYMESIK KSYTIGMRFK MRFEGEEAPE QRFTGTIIGC EDADPKRWKD SKWRCLKVRW 360 DETSTISRPE KVSPWKIEPA LAPPALNPLP MTRPKRPRSN MVPTSPDSSV LTREGSSRVT 420 VDPSPVSAFT RVLQGQEFST LRGNFIDGND PDAAEKSVMW PPSLDDEKID VVSTSKKHGA 480 DCWITPGRSE PTYADLLSGF GTNIDSSHGV RAGMGDPAVV TANSIRKHVM DQDGKFNFLG 540 GSSWSVLPSS LSLNLVDSSQ KGHIQAGDLS YQVRGNATFN GFGDHSVAHC HRTEQPHGNW 600 LMAPLSSHFD YPVHSTELMS MPMVFQNQDI MKPKDGNCKL FGISLIKNPA IPDPAGLNRN 660 MNGADVTHLN IHQIHSNESD LKSEPFRGSM LADKSLAIND ADKLQQTCTQ NLKDAHCKSQ 720 GTSARSCTKV QKQGIALGRS VDLSRFNNYD ELVAELDQLF EFGGELLAPK KNWLIVYTDD 780 EGDMMLVGDD PWQEFCGMVR KIFIYTREEV QKMNRGSLNL KGDENPSVEG KEAKEIEGQA 840 VPSISAPESS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | ARF family protein |