PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516466.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 486aa MW: 53688.8 Da PI: 7.2195

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.9	4.1e-36	57	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 lp+G++F+Ptd+el+ e+L++kv++k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ XP_023516466.1 57 LPAGVKFDPTDQELI-EHLEAKVKSKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqgg 149 799**********.99*****5553344444434666646******.555666799**************73334555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_023516466.1 150 ETRWHKTGKTRPVMA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 199 778********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MRNSSEIIGS IVGVGGGGGG GSDSLLDAKL EQHQLCGSKH CPGCGHKLEG RPNWVGLPAG 60 VKFDPTDQEL IEHLEAKVKS KDMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR 120 HFFHRPSKAY TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMANGKQKG CKKILVLYTN 180 FGKNRKPEKT NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSERA VAAAEGSFEV 240 ANLSRRENAA SGSCSSMTQT EDMSPAATAG VGGSVASFSS LDIQPHLKFD HFGFVPFRTC 300 FEVGMEEGST GRKMGLQDGR GGGGTCSGGG EFELRDHRHE RTSALDHHHH HQLVVAHNEH 360 HHHHSVVNHH QPTTAFHVTT NPTHQISTII TPSPLLLLDH DSYHLHHSPI ILQNQPFHQQ 420 EGESEHHKMG GRSASGLEEL IMGCTSSSSI THQPETSIAS GREADQWMKY SSFWPDSNNP 480 NLHGHG

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MRNSSEIIGS IVGVGGGGGG GSDSLLDAKL EQHQLCGSKH CPGCGHKLEG RPNWVGLPAG  60
VKFDPTDQEL IEHLEAKVKS KDMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR  120
HFFHRPSKAY TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMANGKQKG CKKILVLYTN  180
FGKNRKPEKT NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSERA VAAAEGSFEV  240
ANLSRRENAA SGSCSSMTQT EDMSPAATAG VGGSVASFSS LDIQPHLKFD HFGFVPFRTC  300
FEVGMEEGST GRKMGLQDGR GGGGTCSGGG EFELRDHRHE RTSALDHHHH HQLVVAHNEH  360
HHHHSVVNHH QPTTAFHVTT NPTHQISTII TPSPLLLLDH DSYHLHHSPI ILQNQPFHQQ  420
EGESEHHKMG GRSASGLEEL IMGCTSSSSI THQPETSIAS GREADQWMKY SSFWPDSNNP  480
NLHGHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-137	NAC family protein