PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516310.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

FAR1

Protein Properties

Length: 876aa MW: 99173.6 Da PI: 6.4038

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.1	5.3e-17	60	132	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GFs + + ++sk +g i++r+fvC +e +++ + C+a+l++++++++kw+vtk+++eH+H+ XP_023516310.1 60 FYDEYARRIGFSSKLGQLSRSKSDGIIISREFVCARECPERKPAGS--------------CDAMLRIELKDQDKWVVTKFVKEHSHS 132 9**********************************988887666..............************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence
MDEMVRVDGL AHPAVVDDSD VDPHEGQINT AEDSAFHDED GIIEPYEGME FESEGDAKTF 60 YDEYARRIGF SSKLGQLSRS KSDGIIISRE FVCARECPER KPAGSCDAML RIELKDQDKW 120 VVTKFVKEHS HSTVNSSKVH YLRPRRHFAG AAKTMTEAYT GSAGVPSGVM SVLMDDNRAP 180 AGKTRGGWKT SQAEANRSLN NASTMNYPIR NAGQKRTLGR DAQNMLEYFK KMQSENPGFF 240 YAIQLDEDNR MANVFWADAR SRAAYSHFGD AVTLDTMYRV NQFRVPFAPF TGVNHHGQTI 300 LFGCALLLDE SEASFVWLFK TFLTAMNNRQ PVSVTTDQDR AIHVAIAQVF PDARHCISKW 360 HVLREGQQKL AHVCLTYPNF QVELYNCINL TETIEEFESA WNCIIEKYNL GRNDWLQSLY 420 NARAQWVPVY VRDSFFAVIS PNQGYDNSFF DGYVNQQTTL PLFFRQYERA LENWFEKEIE 480 ADFDTMCTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE GDATLSTFRV 540 AKFEDDQKAY VVTLNYPDMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHFILRRWT 600 RNARNGLGSD ERAIELHGQE SLSSRYNNLC REAIRYAEEG ATAPETYNLA MTALKEAGKK 660 VATVKNNIAK VAPPSSQVSG VGYDERKTSA SASDTTPLLW PRQDEVMRRF NLNDAGAHVQ 720 SIADLNYPHI APVSLHRDDN PPDHVAVLPY LKSMTWVMEN KNSTAGNRVA VINLKLQDYS 780 KSPSAESEVK FQLSRVSLEP MLRSMAYISE QLSTPANKVA VINLKLQDTE TTSGESEVKF 840 QVSRDTLGAM LRSMAYIREQ LSNAAESEPL PKKQRK

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence

MDEMVRVDGL AHPAVVDDSD VDPHEGQINT AEDSAFHDED GIIEPYEGME FESEGDAKTF  60
YDEYARRIGF SSKLGQLSRS KSDGIIISRE FVCARECPER KPAGSCDAML RIELKDQDKW  120
VVTKFVKEHS HSTVNSSKVH YLRPRRHFAG AAKTMTEAYT GSAGVPSGVM SVLMDDNRAP  180
AGKTRGGWKT SQAEANRSLN NASTMNYPIR NAGQKRTLGR DAQNMLEYFK KMQSENPGFF  240
YAIQLDEDNR MANVFWADAR SRAAYSHFGD AVTLDTMYRV NQFRVPFAPF TGVNHHGQTI  300
LFGCALLLDE SEASFVWLFK TFLTAMNNRQ PVSVTTDQDR AIHVAIAQVF PDARHCISKW  360
HVLREGQQKL AHVCLTYPNF QVELYNCINL TETIEEFESA WNCIIEKYNL GRNDWLQSLY  420
NARAQWVPVY VRDSFFAVIS PNQGYDNSFF DGYVNQQTTL PLFFRQYERA LENWFEKEIE  480
ADFDTMCTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE GDATLSTFRV  540
AKFEDDQKAY VVTLNYPDMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHFILRRWT  600
RNARNGLGSD ERAIELHGQE SLSSRYNNLC REAIRYAEEG ATAPETYNLA MTALKEAGKK  660
VATVKNNIAK VAPPSSQVSG VGYDERKTSA SASDTTPLLW PRQDEVMRRF NLNDAGAHVQ  720
SIADLNYPHI APVSLHRDDN PPDHVAVLPY LKSMTWVMEN KNSTAGNRVA VINLKLQDYS  780
KSPSAESEVK FQLSRVSLEP MLRSMAYISE QLSTPANKVA VINLKLQDTE TTSGESEVKF  840
QVSRDTLGAM LRSMAYIREQ LSNAAESEPL PKKQRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein