PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516181.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 361aa MW: 41045.7 Da PI: 7.8055

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.1e-15	45	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_023516181.1 45 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDEEEAAAHAYDLAALKYWG 104 57*****************999955656446***********************98 PP
2	AP2	51.2	3e-16	147	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_023516181.1 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDIAAIEYRG 198 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MAKSTSQQLQ IRESNNNVNK NIVMKTKTKR TRRSVPRDSP PQRSSIYRGV TRHRWTGRYE 60 AHLWDKNCWN ESQNKKGRQV YLGAYDEEEA AAHAYDLAAL KYWGQETILN FPLSTYQKEL 120 KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA 180 TQEEAATAYD IAAIEYRGLN AVTNFDLSRY IKWLKPCNDV VYASDHTLNI DSVLPSPKQE 240 LDLGLFPADQ NQSSTDSATA EPIALPPSHR PTTTSTSALG LLLQSSKFKE MMEMNSATEC 300 PSTPSSAEKL ERRRCLFPDD VQTFFACDSS GSYCYGEADD AIFSDFNCFV PPPPSHYDFD 360 D

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MAKSTSQQLQ IRESNNNVNK NIVMKTKTKR TRRSVPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQV YLGAYDEEEA AAHAYDLAAL KYWGQETILN FPLSTYQKEL  120
KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA  180
TQEEAATAYD IAAIEYRGLN AVTNFDLSRY IKWLKPCNDV VYASDHTLNI DSVLPSPKQE  240
LDLGLFPADQ NQSSTDSATA EPIALPPSHR PTTTSTSALG LLLQSSKFKE MMEMNSATEC  300
PSTPSSAEKL ERRRCLFPDD VQTFFACDSS GSYCYGEADD AIFSDFNCFV PPPPSHYDFD  360
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-102	AP2 family protein