PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515983.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 409aa MW: 44504.2 Da PI: 7.7368

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_023515983.1 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80 5789*********************97 PP
2	zf-CCCH	38.9	1.4e-12	101	125	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_023515983.1 101 QPECQYYLKTGTCKFGATCKFHHPR 125 799********************96 PP
3	zf-CCCH	34.9	2.6e-11	147	171	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_023515983.1 147 EPECAYYIRTGQCKFGNTCKFHHPQ 171 799********************97 PP
4	zf-CCCH	38	2.7e-12	265	291	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_023515983.1 265 PGQPECQFYMKTGDCKFGAVCRFHHPR 291 5789*********************96 PP
5	zf-CCCH	40.3	5.4e-13	311	337	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_023515983.1 311 PGEPLCIFYSRYGICKFGPSCKFDHPM 337 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MEYDSGIPMS VTEGHSSALT PSLREGSLAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS 60 YYIRTGLCRF GATCRFNHPP NRELAIATAR MKGEFPERIG QPECQYYLKT GTCKFGATCK 120 FHHPRDKAGI AGRVALNIIG YPLRPSEPEC AYYIRTGQCK FGNTCKFHHP QPTNMMVSLR 180 GSPIYPTVQS PTPGQQSYPG GSTNWSRASF IPSPRWEGPS SYASLILPQG VLSVPGWNAF 240 NDQLGSVSSS ESPQQTRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERVLPAPDC 300 VLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMGIF TYNLSAAAAA AASSANAPVQ 360 HLFGTSSGST ALNLSSEGLV EAGSAKPRRL SISETREMPS DDENIDTEG

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MEYDSGIPMS VTEGHSSALT PSLREGSLAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS  60
YYIRTGLCRF GATCRFNHPP NRELAIATAR MKGEFPERIG QPECQYYLKT GTCKFGATCK  120
FHHPRDKAGI AGRVALNIIG YPLRPSEPEC AYYIRTGQCK FGNTCKFHHP QPTNMMVSLR  180
GSPIYPTVQS PTPGQQSYPG GSTNWSRASF IPSPRWEGPS SYASLILPQG VLSVPGWNAF  240
NDQLGSVSSS ESPQQTRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERVLPAPDC  300
VLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMGIF TYNLSAAAAA AASSANAPVQ  360
HLFGTSSGST ALNLSSEGLV EAGSAKPRRL SISETREMPS DDENIDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-178	C3H family protein