PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515624.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 317aa MW: 35670.5 Da PI: 8.6878

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	137	180	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ErrRRdriN+++ L++l+P++ K + a+ L +++Y+k+L+ XP_023515624.1 137 QSERRRRDRINQKLKDLQKLVPNR-----SKTDRASLLDDTIQYLKQLK 180 68*******************8.....6***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MNQWIVPKWN QSQQHEDASR SSHVHFPHKN TTFSHNLVPM AKDGHGEVLL QMAPTKHSWG 60 QSEDTLESLV HSSLLRKRTR SNPEGKDEAF MSGAFLESHR SFKAKNSIED LAPDDGSEDE 120 HNTKRKTSGS CSIRRTQSER RRRDRINQKL KDLQKLVPNR SKTDRASLLD DTIQYLKQLK 180 AQVQFMCSIR SDVPQMIIPL GMQQQQLQVS LLAARMGLLD TASMAPSSSS FPCAAACPPT 240 LLPSIISSTK PKSKLSTSAF VPPTDPFCTL LAQSMDMDLY SKMVTLYCQE VNRTPRQASK 300 LMESQCVEGI EEDMHQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	143	KRKTSGSCSIRRTQSERRRR
2	139	144	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-13	bHLH family protein