PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515381.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 24858.5 Da PI: 9.8104

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.7e-18	90	144	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eql+ Lee F+ + +++ +++ LA++l+L+ rqV vWFqNrRa+ k XP_023515381.1 90 RKKLRLSQEQLTLLEETFKLHTTLNLAQKLALAQQLNLKARQVEVWFQNRRARSK 144 788899***********************************************98 PP
2	HD-ZIP_I/II	110	1.7e-35	90	178	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rls+eq++lLEe+F+ +++L+ +K +la++L+l++rqv+vWFqnrRAR k+kq+E+d+e+Lk+ +++lkeen rL+ke +eLr+ XP_023515381.1 90 RKKLRLSQEQLTLLEETFKLHTTLNLAQKLALAQQLNLKARQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRS 178 69*************************************************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MGDQDELCNT RLGLALGFGD YVPKKMQKAN KQPKFLSDLS FSLIPRQESA INMQLQANEP 60 SKDSSFGISR DRSSTDYNCN AISGGLERER KKLRLSQEQL TLLEETFKLH TTLNLAQKLA 120 LAQQLNLKAR QVEVWFQNRR ARSKLKQTEV DCEFLKKYCE RLKEENGRLK KELQELRSTK 180 LGASQLYIQL PKAATLTICP SCDKTTRPAA AVEAHSPPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	94	RERKKLR
2	139	147	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-34	HD-ZIP family protein