PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023514913.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARR-B
Protein Properties Length: 553aa    MW: 62218.8 Da    PI: 7.0354
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023514913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.94.1e-22204257155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt  L  +F++av+ + G ++A+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  XP_023514913.1 204 KAKVVWTDFLQYKFLHAVHFI-GLDRAVPKKILEVMNVPGLTRENVASHLQKYRI 257
                     6799*****************.********************************6 PP
2Myb_DNA-binding24.94.8e-08207256248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT  ++ ++++av+  G +   +k+I + m+  g+t++++ s++qky+
   XP_023514913.1 207 VVWTDFLQYKFLHAVHFIGLDraVPKKILEVMNvPGLTRENVASHLQKYR 256
                      67***********************************************7 PP
3Response_reg71.92.6e-24201281109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     v+++dD+ + + ++ ++l+  +y ev ++ d+  al +l+  +  +Dlil+ + mp+mdG+el+++ +ee  k+p+i++++ + e+ +++a++ G
  XP_023514913.1  20 VMVIDDDATSLAIVSSLLRALNY-EVSSFYDPIRALYTLRVGKqsFDLILTALYMPKMDGFELTRRVNEEF-KIPVIMISTDDRENVMVRAIEEG 112
                     89*********************.***************777777**********************9999.*********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     +  +l Kpf+ ++l++
  XP_023514913.1 113 VVLYLLKPFSSNDLRN 128
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MDHQQVEDSN IIVPPVRVHV MVIDDDATSL AIVSSLLRAL NYEVSSFYDP IRALYTLRVG  60
KQSFDLILTA LYMPKMDGFE LTRRVNEEFK IPVIMISTDD RENVMVRAIE EGVVLYLLKP  120
FSSNDLRNIW QFAISTKSRS IPNTNLYTPE TGSHGVRFRS IESQPVSSSK GVVSGRKKKK  180
DSKGKNGNQE KVIDKKESNP MKKKAKVVWT DFLQYKFLHA VHFIGLDRAV PKKILEVMNV  240
PGLTRENVAS HLQKYRIFLR KVAERCMISS DKTTEEIIWS KFLSRHASFV LEKIQQKRSF  300
NLNSSQNPNF PPFPNRDQCS NPNNGDRCRF TNGQLSFAKK LPLYNIGHTA SFTNNVDPLP  360
MNVDNNAQAF NFSGSQFQNS TPFQDPYLGS SFSSNNIYHG GSSVGLNGEI STTQNNVSNG  420
NYVGFDGNYV GFGFGGDHNS YNWGLMCNNN DINFGGASQG TMSHSNHALD NKVNGQEDSG  480
FLPCLYPSES FVHNQIPNQQ QDSVGFMKDQ SNQLNNMYIT DDESSTFDPL SIDDQVLDEF  540
LGWLLVNDTL AHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181RKKKKD
2176206RKKKKDSKGKNGNQEKVIDKKESNPMKKKAK
3177207RKKKKDSKGKNGNQEKVIDKKESNPMKKKAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-49ARR-B family protein