PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514686.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 375aa MW: 41519.2 Da PI: 10.4072

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514686.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	5.8e-16	65	152	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ r+ +qCk++++ ++k+yk +k+ + + + s++p++d+l+ XP_023514686.1 65 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYTKIPRTDIQCKNRIDTVKKKYKTEKAKISAG--GGPSKWPFYDRLD 152 7***********************************87666677899*****************99997..67779****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MKDDDEIQSS GSPASPISNG RITVTVAAAP PPPTPPSQNT ITLALPNQQS KGSGGGSGGG 60 GREDCWSEGA TSVLIDAWGE RYLELSRGNL KQKHWKEVAD IVSSREDYTK IPRTDIQCKN 120 RIDTVKKKYK TEKAKISAGG GPSKWPFYDR LDQLIGPASK NPVSSAGVAT TVNPPLQNQK 180 VPLGIPVVNR SLIPYQAHHN HNHQQQQKGQ KAQKVQFHKR PRTDSDSSGS ERETSPTSSD 240 SYRQGNYRRK SARVQKEVVN PNLGQMGKTE KGRNGSREKG WRNAVSKLTE AILKFGEAYE 300 QAESSKLQQV VEMEKQRMKF AKDLELQRMQ FFMKTQLEIS QLKHGRRVVA AGNHHCSNNN 360 NNNNNNNHSN SESSN

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MKDDDEIQSS GSPASPISNG RITVTVAAAP PPPTPPSQNT ITLALPNQQS KGSGGGSGGG  60
GREDCWSEGA TSVLIDAWGE RYLELSRGNL KQKHWKEVAD IVSSREDYTK IPRTDIQCKN  120
RIDTVKKKYK TEKAKISAGG GPSKWPFYDR LDQLIGPASK NPVSSAGVAT TVNPPLQNQK  180
VPLGIPVVNR SLIPYQAHHN HNHQQQQKGQ KAQKVQFHKR PRTDSDSSGS ERETSPTSSD  240
SYRQGNYRRK SARVQKEVVN PNLGQMGKTE KGRNGSREKG WRNAVSKLTE AILKFGEAYE  300
QAESSKLQQV VEMEKQRMKF AKDLELQRMQ FFMKTQLEIS QLKHGRRVVA AGNHHCSNNN  360
NNNNNNNHSN SESSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-80	Trihelix family protein