PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514314.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 462aa MW: 49448 Da PI: 8.3225

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48	2.2e-15	290	335	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_023514314.1 290 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 335 9**********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MSQCVPNWDL SASAAPPPFH ASSASHDVVP TFEYEVTELT WENGQLAMHG LGLPRVTGKI 60 QHGGGGGGGG GGGGGSKNTW DNKPARASGT LESLVNQGTC HGEIIGFNGT DLVPWFSDHH 120 RQTLQTPAAM DAMVPCEAGK APAESSDIRV ATRVENEKGR MVHGKGGRVM ARMVHSGTEG 180 SGCRNQMKVS GNAAKFGGES GKKVTSDTRD RDYSVVSGGG GGLTVTTATS QESMDNTRSG 240 KICIKTTTTA ATDDRDSVCH STHQVEEEDR HKENPKSSIS TKRSRAAAIH NQSERKRRDK 300 INQRMKTLQK LVPNSNKTDK ASMLDEVIEY LKQLQAQVQM MSRVNMPMMV PMALHQHLPL 360 ASLMNMPMMG MAGMGMGLGM DHLNMIANRP ALAAGMSPLL HPTAFMPTAA WDGGTADHIQ 420 PLPTDPLSTF LACQSQPMAM EAYNRIAMMF QQHPSMAGGS KN

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MSQCVPNWDL SASAAPPPFH ASSASHDVVP TFEYEVTELT WENGQLAMHG LGLPRVTGKI  60
QHGGGGGGGG GGGGGSKNTW DNKPARASGT LESLVNQGTC HGEIIGFNGT DLVPWFSDHH  120
RQTLQTPAAM DAMVPCEAGK APAESSDIRV ATRVENEKGR MVHGKGGRVM ARMVHSGTEG  180
SGCRNQMKVS GNAAKFGGES GKKVTSDTRD RDYSVVSGGG GGLTVTTATS QESMDNTRSG  240
KICIKTTTTA ATDDRDSVCH STHQVEEEDR HKENPKSSIS TKRSRAAAIH NQSERKRRDK  300
INQRMKTLQK LVPNSNKTDK ASMLDEVIEY LKQLQAQVQM MSRVNMPMMV PMALHQHLPL  360
ASLMNMPMMG MAGMGMGLGM DHLNMIANRP ALAAGMSPLL HPTAFMPTAA WDGGTADHIQ  420
PLPTDPLSTF LACQSQPMAM EAYNRIAMMF QQHPSMAGGS KN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	299	ERKRRD
2	295	300	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	8e-80	bHLH family protein