PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023514276.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 300aa    MW: 34178.1 Da    PI: 8.4425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023514276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.5e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+ Ed +l ++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_023514276.1 16 RGRWTAVEDNKLRKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINYL 63
                     8*******************************99************97 PP
2Myb_DNA-binding52.21.4e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++Ede ++++++ +G++ W++Ia +++ gRt++++k++w++
   XP_023514276.1  69 RGNITQQEDETILKLHTTFGNR-WSLIAGHLP-GRTDNEIKNYWNS 112
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MRMGRTPCCE KEGLRRGRWT AVEDNKLRKY IEANGEGSWR LLPKNAGLLR CGKSCRLRWI  60
NYLRADLKRG NITQQEDETI LKLHTTFGNR WSLIAGHLPG RTDNEIKNYW NSRLSKKIYS  120
PTGKKDAPES ADLSKRSTPG RPKKSAILKK NKKQTTPRES SQSNSIAKVG LLDAGSTSRL  180
EGAEKEPSKS DEEEKKETSN AAMMDPKVEE KETWELGSNE LIDETIKGID ERENSVWSSN  240
IESEELYYSS AWASSINSNF NSEWLNWNWE DDGGVLGQNF KEPSSWFYWA NTNGKGEECL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-65MYB family protein