PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514206.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 169aa MW: 19586.4 Da PI: 6.0299

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.5	2.7e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ nr+vtf+kRr g++KKA ELSvLCd+ev +++f ++g+lye++s XP_023514206.1 9 KRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS 59 79***********************************************96 PP
2	K-box	28.7	5.5e-11	81	151	4	76
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 +s+ +e + e+ + e + + + + Lq+ q h+ d ++L+++++ +Le+qLe sl ki+s++ e ++e+ XP_023514206.1 81 QSQ--NEVDTKEHEESEDTLMVSFGKLLQTIQSHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMEN 151 222..333333445555566666777889999**************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MGRKKIELKR IEDMCNRHVT FCKRRSGLIK KARELSVLCD VEVGLVVFTN RGRLYEFCSG 60 DSLLNIIKRY QSHFEGRSQS QSQNEVDTKE HEESEDTLMV SFGKLLQTIQ SHVEEPDFKK 120 LNVNDMVHLE NQLEASLDKI KSQRVEAMME NSSWIDNMDM AIAMVDSQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	9e-38	MIKC_MADS family protein