PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023514168.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | ARF | ||||||||
Protein Properties | Length: 680aa MW: 76155 Da PI: 6.321 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 4.8e-24 | 125 | 226 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ kk+a+e+ +++++ +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++ XP_023514168.1 125 FCKILTASDTSTHGGFSVLKKHATEClppldMSQSTPTQELAAKDLHGHEWKFKHIFRGQPRRHLLTTGWSTFVVSKRLVAGDAFVFL--RGDNG 217 99****************************9555555669************************************************..34899 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v+r+ XP_023514168.1 218 ELRVGVRRQ 226 99****996 PP | |||||||
2 | Auxin_resp | 97.4 | 2.1e-32 | 251 | 330 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++k+++ vGmRfkm+fe+e+s+err++Gt+vgv d++p W++SkWrsLk XP_023514168.1 251 ASHAVRTQTFFVVYYKPRT--SQFIIGLNKYLETIKNRYEVGMRFKMRFEGEESPERRFTGTIVGVGDISP-IWSDSKWRSLK 330 689***************6..9*************************************************.8********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence |
MTLSEQNPAE FRKGLEGEGL FEELWKACAG PLVEVPFNGE RVFYFPQGHM EQLEESTNHE 60 LNHQIPHFDL PSKILCRVVN IRLLAEKETD EVYAQITLQP EADQSEPQCP DPEPPERTRP 120 TVHSFCKILT ASDTSTHGGF SVLKKHATEC LPPLDMSQST PTQELAAKDL HGHEWKFKHI 180 FRGQPRRHLL TTGWSTFVVS KRLVAGDAFV FLRGDNGELR VGVRRQARQQ SLMPSSVISS 240 HSMHLGVLAT ASHAVRTQTF FVVYYKPRTS QFIIGLNKYL ETIKNRYEVG MRFKMRFEGE 300 ESPERRFTGT IVGVGDISPI WSDSKWRSLK IQWDEAAAIQ RPERVSPWEI EPFVPSASLN 360 FTHPSIKSKR ARPVEVPPPE NTSSSTPTGF WLHGSTIPHE IPQLSGANDV PSSGNQVVWS 420 LWQQTLDVNV DSSRSHCNPM AHVEGIWPSP PPPLCNNSLK PLPSPYSPSS TSKPSSELIE 480 HDQSEKGNKP DISLGCRIFG IDLKKNSSIV PSLEKKSCCQ TTVATDIAKD PVPIAAVTSQ 540 ADAGKEQQQV ASELSMKGTQ TNHIPNSSSR TRTKVQMQGV AVGRAVDLTT LKGYEDLIDE 600 LENVFEIKGE LREMNKWSIV FTDDEYDMML VGDDPWPEFC QMVKRIFIYS SEEVKTMSSN 660 SKLVSPPSLD SLDSERKTES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | ARF family protein |