PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514163.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 594aa MW: 65921 Da PI: 5.8598

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.2e-07	477	525	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v G g+W+ I + Rt ++k++w+++l XP_023514163.1 477 AWTLVEVIKLVEGVSICGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 525 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MKLEDNMEYT SGFVISLKIF KYLWKKVDGD GRFVPATDDE VMEVEDLLED DKSEKVEDAG 60 QIVECVPTEG TLFGKPHVEI SNGLPQSEGD AGYTARLEYI EEVLQKVKQE ERLRLACGSL 120 NYPSAYVDGD RKGSDQHGRL PVTDEKFQSQ ISLQEISHCS SSLNENHGNE HGSLANFLKH 180 PDKSVESESS DAICTTSKPD FSMLKGDICL DNLSIRELHE CFKATFGRDT TVKDKSWLKR 240 RIAMGLTNSC DIPASSFIIK EGKFVEESSQ NVVGVSTVPT AEALNIECSG SPTTYCLETK 300 DHHHVEEIEL DHGIEDQHEE RAAVKRIRKP TRRYIEELSE VESREYVPKV ISLSKSSVSD 360 GVSANSIQRP SKKVCSDRGR TVITRLDSLG GSGVQVPCVS RVRRSRPRKD IVALVFTLPE 420 KDQNPSVKDT NTNEVEEKNL EEKNLEEKPT DSGNASDDNA IIVPTPKGGS RRKHHRAWTL 480 VEVIKLVEGV SICGAGRWSE IKKLSFSSYS YRTSVDLKDK WRNLLKASFA QTPVGEGMSS 540 RKHVSVSIPE QILLQVRELA EMHAQIPPSN HGQGKLGGVS SGTNIHEISP AVCL

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MKLEDNMEYT SGFVISLKIF KYLWKKVDGD GRFVPATDDE VMEVEDLLED DKSEKVEDAG  60
QIVECVPTEG TLFGKPHVEI SNGLPQSEGD AGYTARLEYI EEVLQKVKQE ERLRLACGSL  120
NYPSAYVDGD RKGSDQHGRL PVTDEKFQSQ ISLQEISHCS SSLNENHGNE HGSLANFLKH  180
PDKSVESESS DAICTTSKPD FSMLKGDICL DNLSIRELHE CFKATFGRDT TVKDKSWLKR  240
RIAMGLTNSC DIPASSFIIK EGKFVEESSQ NVVGVSTVPT AEALNIECSG SPTTYCLETK  300
DHHHVEEIEL DHGIEDQHEE RAAVKRIRKP TRRYIEELSE VESREYVPKV ISLSKSSVSD  360
GVSANSIQRP SKKVCSDRGR TVITRLDSLG GSGVQVPCVS RVRRSRPRKD IVALVFTLPE  420
KDQNPSVKDT NTNEVEEKNL EEKNLEEKPT DSGNASDDNA IIVPTPKGGS RRKHHRAWTL  480
VEVIKLVEGV SICGAGRWSE IKKLSFSSYS YRTSVDLKDK WRNLLKASFA QTPVGEGMSS  540
RKHVSVSIPE QILLQVRELA EMHAQIPPSN HGQGKLGGVS SGTNIHEISP AVCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	403	409	RRSRPRK
2	403	410	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	7e-45	MYB_related family protein