PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514161.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 633aa MW: 70032.7 Da PI: 5.5586

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.4e-07	516	564	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v G g+W+ I + Rt ++k++w+++l XP_023514161.1 516 AWTLVEVIKLVEGVSICGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 564 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MGTVVGFVEN EGKIVDSGIL QDVSTLSPNQ IADPVVYKLV RLEDNMEYTS GFVISLKIFK 60 YLWKKVDGDG RFVPATDDEV MEVEDLLEDD KSEKVEDAGQ IVECVPTEGT LFGKPHVEIS 120 NGLPQSEGDA GYTARLEYIE EVLQKVKQEE RLRLACGSLN YPSAYVDGDR KGSDQHGRLP 180 VTDEKFQSQI SLQEISHCSS SLNENHGNEH GSLANFLKHP DKSVESESSD AICTTSKPDF 240 SMLKGDICLD NLSIRELHEC FKATFGRDTT VKDKSWLKRR IAMGLTNSCD IPASSFIIKE 300 GKFVEESSQN VVGVSTVPTA EALNIECSGS PTTYCLETKD HHHVEEIELD HGIEDQHEER 360 AAVKRIRKPT RRYIEELSEV ESREYVPKVI SLSKSSVSDG VSANSIQRPS KKVCSDRGRT 420 VITRLDSLGG SGVQVPCVSR VRRSRPRKDI VALVFTLPEK DQNPSVKDTN TNEVEEKNLE 480 EKNLEEKPTD SGNASDDNAI IVPTPKGGSR RKHHRAWTLV EVIKLVEGVS ICGAGRWSEI 540 KKLSFSSYSY RTSVDLKDKW RNLLKASFAQ TPVGEGMSSR KHVSVSIPEQ ILLQVRELAE 600 MHAQIPPSNH GQGKLGGVSS GTNIHEISPA VCL

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MGTVVGFVEN EGKIVDSGIL QDVSTLSPNQ IADPVVYKLV RLEDNMEYTS GFVISLKIFK  60
YLWKKVDGDG RFVPATDDEV MEVEDLLEDD KSEKVEDAGQ IVECVPTEGT LFGKPHVEIS  120
NGLPQSEGDA GYTARLEYIE EVLQKVKQEE RLRLACGSLN YPSAYVDGDR KGSDQHGRLP  180
VTDEKFQSQI SLQEISHCSS SLNENHGNEH GSLANFLKHP DKSVESESSD AICTTSKPDF  240
SMLKGDICLD NLSIRELHEC FKATFGRDTT VKDKSWLKRR IAMGLTNSCD IPASSFIIKE  300
GKFVEESSQN VVGVSTVPTA EALNIECSGS PTTYCLETKD HHHVEEIELD HGIEDQHEER  360
AAVKRIRKPT RRYIEELSEV ESREYVPKVI SLSKSSVSDG VSANSIQRPS KKVCSDRGRT  420
VITRLDSLGG SGVQVPCVSR VRRSRPRKDI VALVFTLPEK DQNPSVKDTN TNEVEEKNLE  480
EKNLEEKPTD SGNASDDNAI IVPTPKGGSR RKHHRAWTLV EVIKLVEGVS ICGAGRWSEI  540
KKLSFSSYSY RTSVDLKDKW RNLLKASFAQ TPVGEGMSSR KHVSVSIPEQ ILLQVRELAE  600
MHAQIPPSNH GQGKLGGVSS GTNIHEISPA VCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	448	RRSRPRK
2	442	449	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-50	MYB_related family protein