PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514015.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 610aa MW: 67923.1 Da PI: 6.1444

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.6	3.6e-21	477	574	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++++W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ +++ XP_023514015.1 477 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSKVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCG 568 79***********************999999****7778*****777777777777.******************..566999 PP ..EEEE CS B3 91 elvvkv 96 +++++ XP_023514015.1 569 KYMIRG 574 888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MDQTQIWFPQ NHQNFLSDDD DTLMFYSDFP PLSDFPCMSS SSSSSSSLTP APVKATASSP 60 STSSSSTTSW AILKSDAEEP IEEIRVNDNN NSTSVAAAMS SPPPPPPPAE TGFNDVECTD 120 DMMMMDTFGY MNLVEDSNEF FDPTCIFQNE EQKDPLEDLQ LESFEEVVME DLMMMHEEGG 180 NKIDEGKQND VVVEEEDDMA KVFLEWLRSN KETVSADDLR NVRIKKATID SAARRLGGGK 240 EGMKQLLKLV LQWVQTNHLH KRKFKDEANF LGFQAPLPSP PMIGYVPAGG GDAYATSHGF 300 SDHYQLLDSP FAPCFNSFID NFAVGPPPLP LQPHGIAAGY GGGHQYHPYM GQYFQGQGGG 360 GGDTSLVRLD SSATKEARKK RMARQRRFSA HHRHGGHQNQ HPTQMNTNAS DHCTMATTAQ 420 PNSTNWVYWP SLTGAGCPVD SSPVHSIDRL NQNFPLPIPT HRRQGWKSEK NLRFLLQKVL 480 KQSDVGNLGR IVLPKKEAET HLPELEARDG ISIAMEDIGT SKVWNMRYRY WPNNKSRMYL 540 LENTGDFVRA NGLQEGDFIV IYSDVKCGKY MIRGVKVRQP GSKPDSKRPG KLQRKGSTSS 600 PTAVATLKRQ

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MDQTQIWFPQ NHQNFLSDDD DTLMFYSDFP PLSDFPCMSS SSSSSSSLTP APVKATASSP  60
STSSSSTTSW AILKSDAEEP IEEIRVNDNN NSTSVAAAMS SPPPPPPPAE TGFNDVECTD  120
DMMMMDTFGY MNLVEDSNEF FDPTCIFQNE EQKDPLEDLQ LESFEEVVME DLMMMHEEGG  180
NKIDEGKQND VVVEEEDDMA KVFLEWLRSN KETVSADDLR NVRIKKATID SAARRLGGGK  240
EGMKQLLKLV LQWVQTNHLH KRKFKDEANF LGFQAPLPSP PMIGYVPAGG GDAYATSHGF  300
SDHYQLLDSP FAPCFNSFID NFAVGPPPLP LQPHGIAAGY GGGHQYHPYM GQYFQGQGGG  360
GGDTSLVRLD SSATKEARKK RMARQRRFSA HHRHGGHQNQ HPTQMNTNAS DHCTMATTAQ  420
PNSTNWVYWP SLTGAGCPVD SSPVHSIDRL NQNFPLPIPT HRRQGWKSEK NLRFLLQKVL  480
KQSDVGNLGR IVLPKKEAET HLPELEARDG ISIAMEDIGT SKVWNMRYRY WPNNKSRMYL  540
LENTGDFVRA NGLQEGDFIV IYSDVKCGKY MIRGVKVRQP GSKPDSKRPG KLQRKGSTSS  600
PTAVATLKRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-138	B3 family protein