PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513543.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 359aa MW: 40406.4 Da PI: 8.135

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513543.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.8	1.8e-15	49	107	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d s+n k+ ++++lg ++ +e Aa a++ a++k++g XP_023513543.1 49 AYRGVTRHRWTGRYEAHLWDkNSWNEgqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 107 69****************888844467556***********************98 PP
2	AP2	52.6	1.2e-16	150	201	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ + +g XP_023513543.1 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDLAAIEHRG 201 89**99******99966...3.6********************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MAKISHSPHE NSISTTADPS HSSPIHQSKA LKRTRKSVRR DAPAQRSSAY RGVTRHRWTG 60 RYEAHLWDKN SWNEGQNKKG RQVYLGAYDD EEAAAHAYDL AALKYWGAET VINFPRLTYQ 120 DELKEMEGQS REEYIRYLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG 180 TYATQEEAAR AYDLAAIEHR GLNAVTNFDI SRYIKCLRPG EQHIPDNNRP SSPNAGDTAS 240 EFDPKSPLEI TFPSQSSSSD QPTTAPEPHG GHPSSSSATL ELLLHSSKFK HILERTSAAE 300 TPQTLPESVR PRRCIPDDIQ TYFDCSTQDS DDIAGSDDGI FGYLNSYFPS SVFHSALDA

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MAKISHSPHE NSISTTADPS HSSPIHQSKA LKRTRKSVRR DAPAQRSSAY RGVTRHRWTG  60
RYEAHLWDKN SWNEGQNKKG RQVYLGAYDD EEAAAHAYDL AALKYWGAET VINFPRLTYQ  120
DELKEMEGQS REEYIRYLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAR AYDLAAIEHR GLNAVTNFDI SRYIKCLRPG EQHIPDNNRP SSPNAGDTAS  240
EFDPKSPLEI TFPSQSSSSD QPTTAPEPHG GHPSSSSATL ELLLHSSKFK HILERTSAAE  300
TPQTLPESVR PRRCIPDDIQ TYFDCSTQDS DDIAGSDDGI FGYLNSYFPS SVFHSALDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	6e-97	AP2 family protein