PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513512.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 478aa MW: 52979.9 Da PI: 6.9899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3e-09	300	347	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_023513512.1 300 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 347 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MENEFFLNAT EIPQSLMHFD SNPSMATWNH SFSSAMDVQP QQLQLHVPEF NNHCSSSHPS 60 PPDCYLNPVP QQSFQFDSAL SSMVSSPAPS NSNPTNDSFV IRELIGKLGA NSGRRISELN 120 SSSSSSSVAE FSSDPGFAER AARFSCFGSR SFNGRQLTNE FGNFRSHLSI ANEKLSRVSS 180 SPSLKALGSE TKLQEQKNNS SSQEDESSLS NPDKAISNPR KRKAISKAKL KEPIAETPEK 240 GSPKKIKAVE TKENVKTEED SKKTDANLAE EKQQKTNTNP PEPPKDYIHV RARRGQATDS 300 HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQHQV EFLSMKLASV 360 NTTRVDFNMD SLILKQTYQS ATSLPHPIDS SASSYYGHHH HHHYQKPPLP ATSMDPLDSV 420 SCQNLPIQLP PLSSFPLNPS QYPSFGEEDE LLSIVHMGFV QNQAQGKNYD CNLTASST

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MENEFFLNAT EIPQSLMHFD SNPSMATWNH SFSSAMDVQP QQLQLHVPEF NNHCSSSHPS  60
PPDCYLNPVP QQSFQFDSAL SSMVSSPAPS NSNPTNDSFV IRELIGKLGA NSGRRISELN  120
SSSSSSSVAE FSSDPGFAER AARFSCFGSR SFNGRQLTNE FGNFRSHLSI ANEKLSRVSS  180
SPSLKALGSE TKLQEQKNNS SSQEDESSLS NPDKAISNPR KRKAISKAKL KEPIAETPEK  240
GSPKKIKAVE TKENVKTEED SKKTDANLAE EKQQKTNTNP PEPPKDYIHV RARRGQATDS  300
HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQHQV EFLSMKLASV  360
NTTRVDFNMD SLILKQTYQS ATSLPHPIDS SASSYYGHHH HHHYQKPPLP ATSMDPLDSV  420
SCQNLPIQLP PLSSFPLNPS QYPSFGEEDE LLSIVHMGFV QNQAQGKNYD CNLTASST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	247	RKRKAISKAKLKEPIAETPEKGSPKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-81	bHLH family protein