PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513402.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 755aa    MW: 82638.7 Da    PI: 5.8649
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-2092148157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R+++k+
  XP_023513402.1  92 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKN 148
                     688999************************************************995 PP
2START224.92.4e-702825021206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el ++a+ +ep+W++s       +n+de+l++f+++ +     ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+tl
  XP_023513402.1 282 ELAVAAMEELTRMAQMGEPLWMTSLdgstHVLNEDEYLRTFPRGIGpkpagFKCEASRESAVVIMNHINLVEILMDVN-QWSTLFSgivsRAMTL 375
                     57899********************9999999***********999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m++e+q++splvp R++++vRy++q+g+g+w++vdvS+d  ++ p    +vR++++pSg+li++++ng+skvtwvehv
  XP_023513402.1 376 EVLSTGvagnynGALQVMTSEFQVPSPLVPtRESYYVRYCKQHGDGTWAVVDVSLDDVRPTP----GVRCRRRPSGCLIQEMPNGYSKVTWVEHV 466
                     ************************************************************99....6**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv+sg+a+gak+wv tl+rqce+
  XP_023513402.1 467 EVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCER 502
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    
MPAGIMTPAR NMPSMIGRNG NNVGGFVSTS GLVLSQSSMM DGQLLPLDMP QNTSKSDLAR  60
IRDDDFDSAT KSDSDNNHEL VSGDDQDPRP KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ  120
RKELSRELNL EPLQVKFWFQ NKRTQMKNQH ERHENTQLRT ENEKLRADNM RYREALSNAS  180
CPNCGGPTAI GEMSFDEHHL RLENARLREE IDRISAIAAK YIGKPVVNYP LLSPPVPSRP  240
LELGMGNFGP QPGLGGDIHA SPGDLIRSIS GPIEADKPMI IELAVAAMEE LTRMAQMGEP  300
LWMTSLDGST HVLNEDEYLR TFPRGIGPKP AGFKCEASRE SAVVIMNHIN LVEILMDVNQ  360
WSTLFSGIVS RAMTLEVLST GVAGNYNGAL QVMTSEFQVP SPLVPTRESY YVRYCKQHGD  420
GTWAVVDVSL DDVRPTPGVR CRRRPSGCLI QEMPNGYSKV TWVEHVEVDD RGVHNLYKQL  480
VSSGQAFGAK RWVTTLDRQC ERLASAMATN ISTGDVGVIT NQEGRKSMLK LAERMVISFC  540
AGVSASTTHT WTTLSGTGAD DVRVMTRKSI DDPGRPPGIV LSAATSFWLP VPPKTIFDFL  600
RDENSRSEWD ILSNGGVVQE MAHIANGRDT GNCVSLLRVN STNSSQSNML ILQESCTDPT  660
VSFVIYAPVD IVAMNVVLNG GDPDYVALLP SGFAILPDGG GGEGVSGGSL LTVAFQILVD  720
SVPTAKLSLG SVATVNNLIA CTVERIKASL SCEAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein