PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513190.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 245aa    MW: 28060.2 Da    PI: 8.7144
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.5e-2212104199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv +p   ++s+ l +p kf+++hg+   e+ +++l+  sg +W+v l  +k++++++++kGW+eFvk   ++ g f++F+++g+s+f  +v 
  XP_023513190.1  12 FFKVILPQTLTQSK-LAIPHKFVRKHGEA-LETEEVRLKVASGAEWKVGL--TKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCF--HVV 100
                     78888777776666.***********654.46679***************..**************************************..**9 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_023513190.1 101 IFDK 104
                     9998 PP
2B357.42.6e-181562411399
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++ l++p  fa++h+++   +k++++e ++gr+W++ +  ++  + +r+ +++GW++F+++ngLk gD++vF+l+++se +++ ++fr+
  XP_023513190.1 156 KSYLSIPQWFANAHMES---PKEMSVEVSDGRVWKILCgeRWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFRS 241
                     3569**********744...678***************766666667799*************************99999999999985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MASSFESATP HFFKVILPQT LTQSKLAIPH KFVRKHGEAL ETEEVRLKVA SGAEWKVGLT  60
KNDEKIWFEK GWEEFVKFYS VEIGHFLTFR YEGNSCFHVV IFDKTASEIE YPLGCGGKVK  120
KRERFSISEE ATKFQSLTMN PSFMVTMGAS YLHTGKSYLS IPQWFANAHM ESPKEMSVEV  180
SDGRVWKILC GERWPHGVKR VEMRGGWRDF ARDNGLKKGD ICVFELMETS ELSFKATIFR  240
SGCRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-27B3 family protein