PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513174.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 300aa    MW: 34855.4 Da    PI: 10.0934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15.1e-1628121299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                     fkv   +++lk++ l +pkkf+ e+g+k  e+   +++  +g++Wev +  +k++gr+++  GW++Fv+  ++    f+vFk++ r s+f  +v 
  XP_023513174.1  28 FKVV-LAHALKEQKLEIPKKFVGEYGLKAFENNPTRVKVADGEEWEVGV--TKRDGRVWFDYGWQKFVEFYNVGLEYFLVFKYELRsSCF--HVV 117
                     5555.367888888***********9998888899999999********..*********************************666999..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+ 
  XP_023513174.1 118 IFDP 121
                     9985 PP
2B3634.7e-20202293495
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     +  ps+  + + l +p++fae h    ee+ +++l+d++gr+W v++ +y   + ++r+ l++GW++F  +n+Lk+ Df+vF+++++s+++  +k
  XP_023513174.1 202 KIYPSHIQSGAYLNVPRRFAEMHI---EEGAEMVLQDSDGRTWGVTYySYltPQMKRRVELRRGWRKFFVDNDLKVADFCVFEMIRKSSTTIAFK 293
                     56799999999*********9993...24669***************4448644455699***********************997766654443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MSKFLQQQLP GMASSSQLCK DPDNPHFFKV VLAHALKEQK LEIPKKFVGE YGLKAFENNP  60
TRVKVADGEE WEVGVTKRDG RVWFDYGWQK FVEFYNVGLE YFLVFKYELR SSCFHVVIFD  120
PTATEIKYPL KKKKLKMGTN FDDLHLISHP HPQVGKASFG AMKLMNNRRK LRSMTRTSER  180
AGAMAKATTF QSMTPNPSFM CKIYPSHIQS GAYLNVPRRF AEMHIEEGAE MVLQDSDGRT  240
WGVTYYSYLT PQMKRRVELR RGWRKFFVDN DLKVADFCVF EMIRKSSTTI AFKVDIFRAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein