PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512691.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 411aa MW: 47119.7 Da PI: 9.6785

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.3	3.2e-14	22	109	3	96
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +l+ s++ + + l++p f++ + + s tl+ ++g +W+v l rk ++++++++GW +F + +++g +vF+++g+s f +v + XP_023512691.1 22 HKLVLSSTIQARKLRIPEAFVRMIRDE--LSGVATLTVPDGHVWRVGL--RKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAF--CVFI 109 4556677777778******999644..66789**********..********************************9998..6655 PP
2	B3	61.7	1.2e-19	288	378	4	98
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ y+ + r l++GW eF+ +n+L egD++vF+l + +e l+v++f XP_023512691.1 288 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTPDGRQWPVRCLYKVG--RAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMF 377 78899****************866743...5***********55555..566*********************98767776777777 PP - CS B3 98 r 98 r XP_023512691.1 378 R 378 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MTDFSAFRTG GFKRKMPRPY FHKLVLSSTI QARKLRIPEA FVRMIRDELS GVATLTVPDG 60 HVWRVGLRKV DNKFWFEDGW HGFLEHYSIR VGYLLVFRYE GNSAFCVFIF NLNTSEINYQ 120 SAALGGNQRN NYSIQNRIFE ELEDYDIPEA IPSNQSMNSG SLRNKLFGDE WNPHQSKSAS 180 TLQAEYLSTR DIGVQFSAME VKKSADEVRF QNLGDDVHRI KKSGGKKRKL DSSEHHPSSA 240 HSEDLGDIRF RFYESASARK RTVTAEERER AINSAKAFEP GNPFCRVVLR PSYLYRGCIM 300 YLPSCFAEKN LSGVSGFIKL QTPDGRQWPV RCLYKVGRAK LSQGWYEFCL ENNLGEGDVC 360 VFELLRMREI VLKVTMFRVM EEGGRMANPN PTGTMNPPPL RSVTQIKLIR N

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MTDFSAFRTG GFKRKMPRPY FHKLVLSSTI QARKLRIPEA FVRMIRDELS GVATLTVPDG  60
HVWRVGLRKV DNKFWFEDGW HGFLEHYSIR VGYLLVFRYE GNSAFCVFIF NLNTSEINYQ  120
SAALGGNQRN NYSIQNRIFE ELEDYDIPEA IPSNQSMNSG SLRNKLFGDE WNPHQSKSAS  180
TLQAEYLSTR DIGVQFSAME VKKSADEVRF QNLGDDVHRI KKSGGKKRKL DSSEHHPSSA  240
HSEDLGDIRF RFYESASARK RTVTAEERER AINSAKAFEP GNPFCRVVLR PSYLYRGCIM  300
YLPSCFAEKN LSGVSGFIKL QTPDGRQWPV RCLYKVGRAK LSQGWYEFCL ENNLGEGDVC  360
VFELLRMREI VLKVTMFRVM EEGGRMANPN PTGTMNPPPL RSVTQIKLIR N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-138	B3 family protein