PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512220.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 474aa MW: 54043.3 Da PI: 6.2217

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.1e-10	423	471	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 ++W+ E++ l av+++G+g+Wk+I + Rt+ ++k++w++ XP_023512220.1 423 KKWSLLEEDTLRTAVQRFGKGNWKLILNSYRdifDERTEVDLKDKWRNM 471 58******************************99*********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MNEDICRWIT EFVLRSSMDD HLLKRVLAVI PLSDKDFRLK KTVLLRAIES EISEAVITEK 60 LLEIFEMIEQ LEKAEGLQIM ESMKAAYCAV AVECTVKYLL VEGVYKHGRY FDAVRRIWRG 120 RVTKTELVSN EFKAWKDEVE ASLCDTNIRK KLVHMNTRYD ALKLIGDYLG ESWAAMGPSF 180 LQLSASLVDK KMRKEMHSIQ LERETNNLAI ESVDAGGSGG IELPPQREDC VRTEWQGSGR 240 VLSQPESRRT DLLYSHQDLG TNDGSKQSAI DAMNTERVQE LATETAEGQE SAEKEVAVLQ 300 NASSCRESVA HDLAEKNKTC ENSLEDRNDA GVDNPTINKE AVPLQPMSAN LKDPGHGHKT 360 VFPRPSIMER NSTACTYEWN DSIDDLPEGS PASRLHLHSP KRKAISPLKK YEETKAVGRR 420 RCKKWSLLEE DTLRTAVQRF GKGNWKLILN SYRDIFDERT EVDLKDKWRN MTRY

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MNEDICRWIT EFVLRSSMDD HLLKRVLAVI PLSDKDFRLK KTVLLRAIES EISEAVITEK  60
LLEIFEMIEQ LEKAEGLQIM ESMKAAYCAV AVECTVKYLL VEGVYKHGRY FDAVRRIWRG  120
RVTKTELVSN EFKAWKDEVE ASLCDTNIRK KLVHMNTRYD ALKLIGDYLG ESWAAMGPSF  180
LQLSASLVDK KMRKEMHSIQ LERETNNLAI ESVDAGGSGG IELPPQREDC VRTEWQGSGR  240
VLSQPESRRT DLLYSHQDLG TNDGSKQSAI DAMNTERVQE LATETAEGQE SAEKEVAVLQ  300
NASSCRESVA HDLAEKNKTC ENSLEDRNDA GVDNPTINKE AVPLQPMSAN LKDPGHGHKT  360
VFPRPSIMER NSTACTYEWN DSIDDLPEGS PASRLHLHSP KRKAISPLKK YEETKAVGRR  420
RCKKWSLLEE DTLRTAVQRF GKGNWKLILN SYRDIFDERT EVDLKDKWRN MTRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	8e-27	MYB_related family protein