PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512170.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NF-YC

Protein Properties

Length: 263aa MW: 29045.9 Da PI: 4.4288

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	39.2	1.5e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++++ ++fdfl d+v + XP_023512170.1 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGK 69 899**************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKR GAKTMNSLHL KQCIQTFNVF 60 DFLRDVVGKV PDLGASDAAE DRCISKRRKV EDEDGGNDSE EESKRSKTTE AGHNISGRGR 120 GRGRGRGRGR SSRHSEKDTA IHSDNFEEDL EIPSHPGNNL EKTMPDNGVA EARMENDNIP 180 IDKAVEPSVR NFDLNVNLDE DGDSTSTPVA ASTGSPVKPL TDSKHDEYPG WSVAEMEKMV 240 IDPIQLANLN KSIDDEEDYD EEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	127	RGRGRGRGRG
2	118	128	RGRGRGRGRGR
3	120	129	RGRGRGRGRG
4	120	130	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	3e-49	NF-YC family protein