PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512167.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | MYB | ||||||||
Protein Properties | Length: 220aa MW: 24657.8 Da PI: 8.7514 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++k++G g W++ ++ g+ R++k+c++rw +yl XP_023512167.1 14 KGAWTKEEDQRLINYIKLHGEGGWRSLPNAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.6 | 1.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++TteE el+v+++ +lG++ W++Ia++++ gRt++++k++w+++ XP_023512167.1 67 RGNFTTEENELIVNLHSLLGNK-WSLIAAKLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MGRSPCCEKQ HTNKGAWTKE EDQRLINYIK LHGEGGWRSL PNAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TTEENELIVN LHSLLGNKWS LIAAKLPGRT DNEIKNYWNT HIKRKLYSQG 120 IDPRTHRPLV NKGSTCLTRE VEDSNSNSSG SCLTTEVEEN PELNLNLELS IGLHPHDPTT 180 KSPGGGGGSC FSPILSTTDR VRNGNFLLQP HLFTCYTSST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-81 | MYB family protein |