PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023511969.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 474aa MW: 51440.1 Da PI: 7.5744

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023511969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.7	5.2e-17	156	205	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023511969.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MFDLNLNVDS PDATPNEDSV LFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS 60 TRAGGELFMI NFGILKSGSA NDVVTKELFP IGGTVNPDFG ILQGHNSASS SSNSSRKNWI 120 NLAFDRSGSA GEGRMIQPVQ PQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFILSDYEED LKQMKNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKAYDKAAIQ CNGREAVTNF EPSTYGERVS 300 EGSSEGCRIM LDLNLGISPL SIDNRPKDNE GHLQFQSGPC YANDMSTMIE SNADAAVGDP 360 SLKGPVMASG HVSLWNGLQQ PCLLPSEERV TEKRHALGSS QGVVPNWAWQ IHNQVNATQL 420 PLFSAAASSG FSFSAIPAAI LPPRQPGSTA HNLHFTSAKA SPNSPQLNSQ QPPP

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MFDLNLNVDS PDATPNEDSV LFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS  60
TRAGGELFMI NFGILKSGSA NDVVTKELFP IGGTVNPDFG ILQGHNSASS SSNSSRKNWI  120
NLAFDRSGSA GEGRMIQPVQ PQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFILSDYEED LKQMKNLSKE EFVHILRRQS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKAYDKAAIQ CNGREAVTNF EPSTYGERVS  300
EGSSEGCRIM LDLNLGISPL SIDNRPKDNE GHLQFQSGPC YANDMSTMIE SNADAAVGDP  360
SLKGPVMASG HVSLWNGLQQ PCLLPSEERV TEKRHALGSS QGVVPNWAWQ IHNQVNATQL  420
PLFSAAASSG FSFSAIPAAI LPPRQPGSTA HNLHFTSAKA SPNSPQLNSQ QPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	1e-122	AP2 family protein