PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023511968.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 688aa MW: 76157.8 Da PI: 7.6566

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023511968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.7	2.3e-23	122	223	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_023511968.1 122 FAKTLTQSDANNGGGFSVPRYCAETIfppldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 212 89**************************986445444..8999*****************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+v+r+ XP_023511968.1 213 TGDLCVGVRRA 223 9999**996 PP
2	Auxin_resp	103	3.7e-34	281	364	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++++ Fe+vY+P a+t+eFvv+++ v++a+++++ mRfkm fetedss++++ +Gt+++++ +dpvrWp+S+Wr+L+ XP_023511968.1 281 AATLAASGKRFEIVYYPCAGTPEFVVRASTVRSAMQIHWYSAMRFKMPFETEDSSRISWfMGTISSIQVADPVRWPDSPWRMLQ 364 688999****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MNRGMDSVKE PMRNVEKCLD SQLWHACAGG MVQMPSVNSK VVYFPQGHAE HAQGNVDFGN 60 ARIPSLIPCR VSATKYMADL ETDEIFAKIS LLPLRNNEFN LDDDYELLGH DDIRNQEKPS 120 SFAKTLTQSD ANNGGGFSVP RYCAETIFPP LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG 180 TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AETGDLCVGV RRAKRGIGCG IDYSPGWNPA 240 NSGSSLMGYS DFMRENEGRM VRRHSNGNLN GRVKVESVIE AATLAASGKR FEIVYYPCAG 300 TPEFVVRAST VRSAMQIHWY SAMRFKMPFE TEDSSRISWF MGTISSIQVA DPVRWPDSPW 360 RMLQVSWDEP DLLQNVKSVN PWLVEVVVNM PAIHVSPFLP PRKKPRYPLQ AETAVFGHLP 420 MPSFSTNFFE ATNPFQSITA SNIPAGIQGA RHTQFGLSSS NLQISIPPLR QFPAGLKHLE 480 GATPIPVVRG EDSFGGTKSP DNQSHWLTVG NHIQSSKETK ETKPDHIILF GQLILPNQQS 540 SNSSSGDTTN ASDANLEKAS NLSDGSGLSS QQNGSLDNSS DGGSTSYNGP NKTGLSLDIG 600 HCEVFMELEN VSHTLDLSVL GSYEELYRKL GNMFSVGRSE MLNSVLYQDA LGATKQAGDE 660 PFSKFMRTAR RLTILANSRS RFSKKRQY

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MNRGMDSVKE PMRNVEKCLD SQLWHACAGG MVQMPSVNSK VVYFPQGHAE HAQGNVDFGN  60
ARIPSLIPCR VSATKYMADL ETDEIFAKIS LLPLRNNEFN LDDDYELLGH DDIRNQEKPS  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPP LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AETGDLCVGV RRAKRGIGCG IDYSPGWNPA  240
NSGSSLMGYS DFMRENEGRM VRRHSNGNLN GRVKVESVIE AATLAASGKR FEIVYYPCAG  300
TPEFVVRAST VRSAMQIHWY SAMRFKMPFE TEDSSRISWF MGTISSIQVA DPVRWPDSPW  360
RMLQVSWDEP DLLQNVKSVN PWLVEVVVNM PAIHVSPFLP PRKKPRYPLQ AETAVFGHLP  420
MPSFSTNFFE ATNPFQSITA SNIPAGIQGA RHTQFGLSSS NLQISIPPLR QFPAGLKHLE  480
GATPIPVVRG EDSFGGTKSP DNQSHWLTVG NHIQSSKETK ETKPDHIILF GQLILPNQQS  540
SNSSSGDTTN ASDANLEKAS NLSDGSGLSS QQNGSLDNSS DGGSTSYNGP NKTGLSLDIG  600
HCEVFMELEN VSHTLDLSVL GSYEELYRKL GNMFSVGRSE MLNSVLYQDA LGATKQAGDE  660
PFSKFMRTAR RLTILANSRS RFSKKRQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein