PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023511898.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 322aa MW: 37126.1 Da PI: 4.7253

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023511898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l++ ++ +G ++W++ ++ g+ R++k+c++rw +yl XP_023511898.1 16 RGPWSPAEDLRLINFIQTYGHDNWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	53.2	6.9e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e +++++k +G++ W++Ia++++ gRt++++k+ w+++l XP_023511898.1 69 RGNFTQDEEETIIKLHKTWGNK-WSKIASRLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MGKGRAPCCD KNQVKRGPWS PAEDLRLINF IQTYGHDNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTQDEEETI IKLHKTWGNK WSKIASRLPG RTDNEIKNVW NTHLKKRLLK 120 TTITKDCNEP KESPTTSSSS SSSLRLSNET QDFEPEQPNK TNSVNNDLFC PEQQTTSSLS 180 SNTSNSNSSS QVDKFWPQNH LDFGEEVEKK KENKQIRSES ELESIEIPLE WDKDFWNILD 240 LEDIDLFESN EVDQYYCQAS NFGTEKKQEF ENDKWFKYLE NELGLEADGC TGADDVTAAE 300 RLLMDDVDPC MAYFADGLTQ QL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	1e-69	MYB family protein