PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023004990.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 550aa MW: 59899.9 Da PI: 5.8581

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023004990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.4	3.9e-16	319	365	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+k Lq XP_023004990.1 319 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKTLQ 365 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MIGRLRMNHC VPDFEMADDF SLPTFSSLTR PRKSSMPDDD VVELLWQNGQ VVAHSQNQRS 60 VRKSPPSKFD VSIPQDQTAA VATREIRPSS QLEEPHDLFM QEDEMASWLN YPLVEDHNFC 120 SDLLFPSMTA SLCGNSLTEP RPSATATVTL TQGPPTRLEK QSSVQFSRNR ATGESEPSNS 180 KAMVREATVV DSCDTPSVGP ESRASVIARR KLVEAVNGAD VWRETVCGSD GGGGASVSGD 240 GVGEKELVTC EMTVTSSPGG SSASAEPAAP KLAADDRKRK GRAPDDTECQ SEDVEYESTD 300 PKKQLRGSTS MKRSRAAEVH NLSERRRRDR INEKMKALQE LIPRCNKTDK ASMLDEAIEY 360 LKTLQLQVQM MSMGCGMMPM MFPGIQQYLP PPMGMGIGMG MGMGMEMGMN RPMMQFPNLL 420 AGSNLPMQAG AAAAAAAHLG QRFPLPAFAM PPVPGGNPSQ AQAMNNQPDP IVNPAGTQNT 480 TPPPVSGFPD SYQQFLSSNQ VQFHIAQAVQ VSFFDSHLHF VYKFSLFIKL VGIKISTKCH 540 CQPCESEPTS

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MIGRLRMNHC VPDFEMADDF SLPTFSSLTR PRKSSMPDDD VVELLWQNGQ VVAHSQNQRS  60
VRKSPPSKFD VSIPQDQTAA VATREIRPSS QLEEPHDLFM QEDEMASWLN YPLVEDHNFC  120
SDLLFPSMTA SLCGNSLTEP RPSATATVTL TQGPPTRLEK QSSVQFSRNR ATGESEPSNS  180
KAMVREATVV DSCDTPSVGP ESRASVIARR KLVEAVNGAD VWRETVCGSD GGGGASVSGD  240
GVGEKELVTC EMTVTSSPGG SSASAEPAAP KLAADDRKRK GRAPDDTECQ SEDVEYESTD  300
PKKQLRGSTS MKRSRAAEVH NLSERRRRDR INEKMKALQE LIPRCNKTDK ASMLDEAIEY  360
LKTLQLQVQM MSMGCGMMPM MFPGIQQYLP PPMGMGIGMG MGMGMEMGMN RPMMQFPNLL  420
AGSNLPMQAG AAAAAAAHLG QRFPLPAFAM PPVPGGNPSQ AQAMNNQPDP IVNPAGTQNT  480
TPPPVSGFPD SYQQFLSSNQ VQFHIAQAVQ VSFFDSHLHF VYKFSLFIKL VGIKISTKCH  540
CQPCESEPTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	329	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	7e-66	bHLH family protein