PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023004291.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 474aa MW: 52191.4 Da PI: 8.9114

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023004291.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023004291.1 59 FVCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	13.9	0.00016	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_023004291.1 135 WKCEKCSKVYAVQSDWKAHSKTC 157 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MFATTMSNST SLSEEVTVSL NSLLPPQKIK KKRSLPGNPD PDAEVIALSP RTLLATNRFV 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKEVKKKAY VCPEPSCVHH HPSRALGDLT 120 GIKKHYCRKH GEKKWKCEKC SKVYAVQSDW KAHSKTCGTR EYRCDCGTLF SRKDSFITHR 180 AFCDALAEES ARLSANQFVI APEVEAAEVG AATSAQSLFP FGSHNQFPSS SLSRSPQTYM 240 SLNPWDNPQN PNPNQTHQII KPEDSHSHHF HQIPALPLAG SSPSNATNNP FGIIQDHHRR 300 HHHHHQKAAS SSSSSMIATP FRNLHVSVNP AMSAHLSATA LLQKAATVGV GAVKSSQHQP 360 ESVGHMTHFN MPDIAEFAAP THMDSLTHQL GPDYATWQKT DRLTRDFLGL TGDGNGGGGG 420 SGGMQVSMSV KDMLTYAGGL EIFKPHNNNN NNNNNNNHSA FGFAEPAANE TWDC

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MFATTMSNST SLSEEVTVSL NSLLPPQKIK KKRSLPGNPD PDAEVIALSP RTLLATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKEVKKKAY VCPEPSCVHH HPSRALGDLT  120
GIKKHYCRKH GEKKWKCEKC SKVYAVQSDW KAHSKTCGTR EYRCDCGTLF SRKDSFITHR  180
AFCDALAEES ARLSANQFVI APEVEAAEVG AATSAQSLFP FGSHNQFPSS SLSRSPQTYM  240
SLNPWDNPQN PNPNQTHQII KPEDSHSHHF HQIPALPLAG SSPSNATNNP FGIIQDHHRR  300
HHHHHQKAAS SSSSSMIATP FRNLHVSVNP AMSAHLSATA LLQKAATVGV GAVKSSQHQP  360
ESVGHMTHFN MPDIAEFAAP THMDSLTHQL GPDYATWQKT DRLTRDFLGL TGDGNGGGGG  420
SGGMQVSMSV KDMLTYAGGL EIFKPHNNNN NNNNNNNHSA FGFAEPAANE TWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-113	C2H2 family protein