PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003976.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 495aa    MW: 56552.8 Da    PI: 4.4741
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS240.76.3e-741254892373
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++lLl++A+av+++++ l+++l+++l +l     g +++++la +ft++L+ + ++  +  ++   + e++++  +++l+a+ +++++sP++kf+
  XP_023003976.1 125 TDLLLAAADAVDAQNHPLVSNLIQKLTNLlLCDMGsSSFNQLAWFFTQGLHYKTVG-YDIAAHE--MAEQDQTMNKNSLSAFLMLQQLSPYIKFA 216
                     689***********************99974444559******************9.3333333..333333358889999999*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea ege+++H+iDfdi++G+QWp+L++ La++ ++   lR+T++++ ++++++++eetg+rL++fA+++++pf+f+ +  +  +d 
  XP_023003976.1 217 HFTANQAILEASEGEKMIHVIDFDIMEGIQWPPLMEDLAAK-KQVCLLRLTAIEQGNENEQRRIEETGRRLSEFAKSINLPFKFDHMGIE--KDE 308
                     ****************************************8.5669*********9999**************************97555..455 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres. 279
                     ++e+++v  g +++ n++  lh+l    +  +s+ +++L+ + +lsPk vv+ve+e    ++ +  sF+e f+ea++++s+l dsl   ++  + 
  XP_023003976.1 309 NFEQIQVL-GQTVIGNCSGILHSLS---HRNSSKLETFLNGISKLSPKCVVLVEEElfkvSKAQPMSFVEFFFEAFHHFSSLSDSLLRCFSGVHe 399
                     66888764.889999*********8...445555679*******************65533335569*******************555554442 PP

            GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        +++++++ lg +i + v++        ++ ++  +++++   G+k++p+s+++ +qak+l+  + +d + v++e+g+l l+Wk+rpL s++ 
  XP_023003976.1 400 nGFKQVMDEF-LGTRILESVSQFPCG----KNAMNLREKAFDYlKGYKKIPFSSFNCSQAKYLITLFRGD-FWVQHENGTLSLCWKSRPLCSATI 488
                     2556666666.**********99888....233333345666548***********************88.************************ PP

            GRAS 373 W 373
                     W
  XP_023003976.1 489 W 489
                     * PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MNTMELEPID FLTNYSYFFQ QSHEFGECSL TNSCSSLSEN SSQNSLQDGY FLEYADQNLL  60
QQELDQFDPN NYNFEDFLTT TMDHQSIPEM GDSRSVQEED EEEEENSKTM FKGIQAELME  120
EESLTDLLLA AADAVDAQNH PLVSNLIQKL TNLLLCDMGS SSFNQLAWFF TQGLHYKTVG  180
YDIAAHEMAE QDQTMNKNSL SAFLMLQQLS PYIKFAHFTA NQAILEASEG EKMIHVIDFD  240
IMEGIQWPPL MEDLAAKKQV CLLRLTAIEQ GNENEQRRIE ETGRRLSEFA KSINLPFKFD  300
HMGIEKDENF EQIQVLGQTV IGNCSGILHS LSHRNSSKLE TFLNGISKLS PKCVVLVEEE  360
LFKVSKAQPM SFVEFFFEAF HHFSSLSDSL LRCFSGVHEN GFKQVMDEFL GTRILESVSQ  420
FPCGKNAMNL REKAFDYLKG YKKIPFSSFN CSQAKYLITL FRGDFWVQHE NGTLSLCWKS  480
RPLCSATIWV PTAKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-32GRAS family protein