PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003624.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 305aa    MW: 35700.3 Da    PI: 6.863
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRr+g++KK +ELSvLCda++a+i+fss+gkl+ey+s
  XP_023003624.1 10 RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCS 59
                    8***********************************************96 PP
2K-box51.63.9e-18851721299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ e+l++ l+ ++k +++Lq ++ ++  edL++ +l++L ++e++L++sl+++R++K+e+l +q+e+l++kek+l++en+++ + ++
  XP_023003624.1  85 NDPEELERLLRIMRKDTDELQLSLQRYTAEDLSTFQLRDLDEIENRLQTSLNRVRARKSEVLQQQVENLRRKEKMLEDENEQIYHLIK 172
                     5567777888899********************************************************************9988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MGRGKIAIRR IENRTTRQVT FSKRRAGLFK KTHELSVLCD AQIALIVFSS NGKLFEYCSQ  60
ATCMDQIIRR YQIAIGNPIP DQNMNDPEEL ERLLRIMRKD TDELQLSLQR YTAEDLSTFQ  120
LRDLDEIENR LQTSLNRVRA RKSEVLQQQV ENLRRKEKML EDENEQIYHL IKEQQMAMEE  180
QQQVAAAMMM QKRRSEEEEM RIRRPGDHHQ QQQHQQQHHH HHHHGVEDEA VVCMEGDDGD  240
HGDAFGFSNP HIIHPHLQLQ LHPHEPNSVL QLGGPLPPPP PPFLHPYRLQ PFQPNLHSST  300
TYATP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-51MIKC_MADS family protein