PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003452.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 863aa    MW: 96526 Da    PI: 6.7777
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_023003452.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217
                     99*****************************86555544..8************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_023003452.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp119.91.9e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seF+++++k++ka++ ++v+vGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  XP_023003452.1 253 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVTVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    
MRLSAAGFNP QPPEGEKRVL NSELWHACAG PLVSLPAVGS RAVYFPQGHS EQVAISTNKE  60
VDAHIPSYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSAQEQKEP YLPSELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELMAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRASR PQAMMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKAVYHT RVTVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG LPSFHGLKED DLGLNSQLMW LRGDALDRGI QPLNLHGIGV  420
APWMQPRLDA SMVGLQPEIY QAMAAAALQE MRTVDPAKAQ AASLLQFQQT QNLPNRPATF  480
MSPQMLQQPQ PQPHQTFLQN DHEIQHLPHS QAPTQPTVLR HEMKHQTFNE QQQQQQPQQQ  540
VFDHQQIPSS ISKMTQFGSV SQSLQTIPSF CRQQSFSDSN GIHMTNPIIS PLHSLLGSFS  600
QDETSQLLNL PRTHPMIHSS TWPSKRAAID PLISSGNSQF VHFQEENMGT AQATISQNVS  660
LPPFPGRECS LDQRNGDPQS NLLFGVNIEP SSLLMQNGMP NIRGICSDSD TTAIPFSSNY  720
VNTAGTNFSA NPAGTPSNCI EDSGFLPNFV KVYKSGTFGR SLDISKFSSY HQLRSELAHK  780
FNLEGELEDP LRSGWQLVFV DRENDVLLLG DDPWQEFVNS VWYIKILSPQ EVQEMGRIVS  840
YADRQESSRN LSSGITSVGS LEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein