PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003213.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 710aa    MW: 77507 Da    PI: 8.3441
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.8e-24153254199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_023003213.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 244
                     99****************************963.3445679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_023003213.1 245 GELRLGIRRA 254
                     999****996 PP
2Auxin_resp1064.3e-35279360182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL
  XP_023003213.1 279 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 360
                     689*****************************************************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE  120
NEPIEHKMQE EMTNDSEGED FEGSEKTTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
PLDYSQQRPS QELVAKDLLG IKWKFRHIYR GQPRRHLLTT GWSAFVNKKR LVSGDAVLFL  240
RGNDGELRLG IRRAAQLKGS YAFSNICSQQ LNSSSIMDVV NAISSKTSFS VYYNPRATSS  300
QFVLPFHKFL KSINHSFSAG MRFSLSFETD DAADRRCTGR ITGVGDVDPI RWPGSRWRSL  360
VVRWDDVETK RHGRVSPWEI EPSGSVSVAS NLVPPGLKRT RIGLSPTELE FPAPNGIGAS  420
DFGESLRFQK VLQGQEILGY STPINGDDNV RHPPEKRRSF PGVHGSGIAL MRNGPRIPVT  480
NSETPSRGFM FNESFQFHKV LQGQEIYPSP FFGIATATNE VKASDGYGPV DSVPLSRSKD  540
GWPMTMQSEN FLTRSSIPSV QVSSPSSVFM FQQSMVPVQS FNSYNRGNFT EQRTMNKSTS  600
HNSGTAFMTA SLGVQKQLGL SHPSTTEPAF TGNKAGCRLF GFSLTEGKNV GNTDKASPAT  660
TPINAGTTSV LSSNSGLRCP LKSPLMSKVV GSNCTKGAVQ YRFANCSTYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein