PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003212.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 715aa MW: 77911.3 Da PI: 8.0774

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	144	245	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023003212.1 144 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 235 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023003212.1 236 GELRLGIRRA 245 999**996 PP
2	Auxin_resp	106	4.4e-35	270	351	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023003212.1 270 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 351 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE 120 EEMTNDSEGE DFEGSEKTTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP 180 SQELVAKDLL GIKWKFRHIY RGQPRRHLLT TGWSAFVNKK RLVSGDAVLF LRGNDGELRL 240 GIRRAAQLKG SYAFSNICSQ QLNSSSIMDV VNAISSKTSF SVYYNPRATS SQFVLPFHKF 300 LKSINHSFSA GMRFSLSFET DDAADRRCTG RITGVGDVDP IRWPGSRWRS LVVRWDDVET 360 KRHGRVSPWE IEPSGSVSVA SNLVPPGLKR TRIGLSPTEL EFPAPNGIGA SDFGESLRFQ 420 KVLQGQEILG YSTPINGDDN VRHPPEKRRS FPGVHGSGIA LMRNGPRIPV TNSETPSRGF 480 MFNESFQFHK VLQGQEIYPS PFFGIATATN EVKASDGYGP VDSVPLSRSK DGWPMTMQSE 540 NFLTRSSIPS VQVSSPSSVF MFQQSMVPVQ SFNSYNRGNF TEQRTMNKST SHNSGTAFMT 600 DHSTSTEVPQ GMRPASLGVQ KQLGLSHPST TEPAFTGNKA GCRLFGFSLT EGKNVGNTDK 660 ASPATTPINA GTTSVLSSNS GLRCPLKSPL MSKVVGSNCT KGAVQYRFAN CSTYY

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE  120
EEMTNDSEGE DFEGSEKTTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP  180
SQELVAKDLL GIKWKFRHIY RGQPRRHLLT TGWSAFVNKK RLVSGDAVLF LRGNDGELRL  240
GIRRAAQLKG SYAFSNICSQ QLNSSSIMDV VNAISSKTSF SVYYNPRATS SQFVLPFHKF  300
LKSINHSFSA GMRFSLSFET DDAADRRCTG RITGVGDVDP IRWPGSRWRS LVVRWDDVET  360
KRHGRVSPWE IEPSGSVSVA SNLVPPGLKR TRIGLSPTEL EFPAPNGIGA SDFGESLRFQ  420
KVLQGQEILG YSTPINGDDN VRHPPEKRRS FPGVHGSGIA LMRNGPRIPV TNSETPSRGF  480
MFNESFQFHK VLQGQEIYPS PFFGIATATN EVKASDGYGP VDSVPLSRSK DGWPMTMQSE  540
NFLTRSSIPS VQVSSPSSVF MFQQSMVPVQ SFNSYNRGNF TEQRTMNKST SHNSGTAFMT  600
DHSTSTEVPQ GMRPASLGVQ KQLGLSHPST TEPAFTGNKA GCRLFGFSLT EGKNVGNTDK  660
ASPATTPINA GTTSVLSSNS GLRCPLKSPL MSKVVGSNCT KGAVQYRFAN CSTYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein