PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003211.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 716aa MW: 78039.4 Da PI: 8.0774

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	145	246	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023003211.1 145 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 236 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023003211.1 237 GELRLGIRRA 246 999**996 PP
2	Auxin_resp	106	4.4e-35	271	352	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023003211.1 271 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 352 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN 120 EEEMTNDSEG EDFEGSEKTT TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR 180 PSQELVAKDL LGIKWKFRHI YRGQPRRHLL TTGWSAFVNK KRLVSGDAVL FLRGNDGELR 240 LGIRRAAQLK GSYAFSNICS QQLNSSSIMD VVNAISSKTS FSVYYNPRAT SSQFVLPFHK 300 FLKSINHSFS AGMRFSLSFE TDDAADRRCT GRITGVGDVD PIRWPGSRWR SLVVRWDDVE 360 TKRHGRVSPW EIEPSGSVSV ASNLVPPGLK RTRIGLSPTE LEFPAPNGIG ASDFGESLRF 420 QKVLQGQEIL GYSTPINGDD NVRHPPEKRR SFPGVHGSGI ALMRNGPRIP VTNSETPSRG 480 FMFNESFQFH KVLQGQEIYP SPFFGIATAT NEVKASDGYG PVDSVPLSRS KDGWPMTMQS 540 ENFLTRSSIP SVQVSSPSSV FMFQQSMVPV QSFNSYNRGN FTEQRTMNKS TSHNSGTAFM 600 TDHSTSTEVP QGMRPASLGV QKQLGLSHPS TTEPAFTGNK AGCRLFGFSL TEGKNVGNTD 660 KASPATTPIN AGTTSVLSSN SGLRCPLKSP LMSKVVGSNC TKGAVQYRFA NCSTYY

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN  120
EEEMTNDSEG EDFEGSEKTT TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR  180
PSQELVAKDL LGIKWKFRHI YRGQPRRHLL TTGWSAFVNK KRLVSGDAVL FLRGNDGELR  240
LGIRRAAQLK GSYAFSNICS QQLNSSSIMD VVNAISSKTS FSVYYNPRAT SSQFVLPFHK  300
FLKSINHSFS AGMRFSLSFE TDDAADRRCT GRITGVGDVD PIRWPGSRWR SLVVRWDDVE  360
TKRHGRVSPW EIEPSGSVSV ASNLVPPGLK RTRIGLSPTE LEFPAPNGIG ASDFGESLRF  420
QKVLQGQEIL GYSTPINGDD NVRHPPEKRR SFPGVHGSGI ALMRNGPRIP VTNSETPSRG  480
FMFNESFQFH KVLQGQEIYP SPFFGIATAT NEVKASDGYG PVDSVPLSRS KDGWPMTMQS  540
ENFLTRSSIP SVQVSSPSSV FMFQQSMVPV QSFNSYNRGN FTEQRTMNKS TSHNSGTAFM  600
TDHSTSTEVP QGMRPASLGV QKQLGLSHPS TTEPAFTGNK AGCRLFGFSL TEGKNVGNTD  660
KASPATTPIN AGTTSVLSSN SGLRCPLKSP LMSKVVGSNC TKGAVQYRFA NCSTYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein