PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003210.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 717aa MW: 78166.6 Da PI: 8.2161

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	146	247	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023003210.1 146 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 237 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023003210.1 238 GELRLGIRRA 247 999**996 PP
2	Auxin_resp	106	4.4e-35	272	353	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023003210.1 272 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 353 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE 120 NEEEMTNDSE GEDFEGSEKT TTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ 180 RPSQELVAKD LLGIKWKFRH IYRGQPRRHL LTTGWSAFVN KKRLVSGDAV LFLRGNDGEL 240 RLGIRRAAQL KGSYAFSNIC SQQLNSSSIM DVVNAISSKT SFSVYYNPRA TSSQFVLPFH 300 KFLKSINHSF SAGMRFSLSF ETDDAADRRC TGRITGVGDV DPIRWPGSRW RSLVVRWDDV 360 ETKRHGRVSP WEIEPSGSVS VASNLVPPGL KRTRIGLSPT ELEFPAPNGI GASDFGESLR 420 FQKVLQGQEI LGYSTPINGD DNVRHPPEKR RSFPGVHGSG IALMRNGPRI PVTNSETPSR 480 GFMFNESFQF HKVLQGQEIY PSPFFGIATA TNEVKASDGY GPVDSVPLSR SKDGWPMTMQ 540 SENFLTRSSI PSVQVSSPSS VFMFQQSMVP VQSFNSYNRG NFTEQRTMNK STSHNSGTAF 600 MTDHSTSTEV PQGMRPASLG VQKQLGLSHP STTEPAFTGN KAGCRLFGFS LTEGKNVGNT 660 DKASPATTPI NAGTTSVLSS NSGLRCPLKS PLMSKVVGSN CTKGAVQYRF ANCSTYY

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE  120
NEEEMTNDSE GEDFEGSEKT TTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ  180
RPSQELVAKD LLGIKWKFRH IYRGQPRRHL LTTGWSAFVN KKRLVSGDAV LFLRGNDGEL  240
RLGIRRAAQL KGSYAFSNIC SQQLNSSSIM DVVNAISSKT SFSVYYNPRA TSSQFVLPFH  300
KFLKSINHSF SAGMRFSLSF ETDDAADRRC TGRITGVGDV DPIRWPGSRW RSLVVRWDDV  360
ETKRHGRVSP WEIEPSGSVS VASNLVPPGL KRTRIGLSPT ELEFPAPNGI GASDFGESLR  420
FQKVLQGQEI LGYSTPINGD DNVRHPPEKR RSFPGVHGSG IALMRNGPRI PVTNSETPSR  480
GFMFNESFQF HKVLQGQEIY PSPFFGIATA TNEVKASDGY GPVDSVPLSR SKDGWPMTMQ  540
SENFLTRSSI PSVQVSSPSS VFMFQQSMVP VQSFNSYNRG NFTEQRTMNK STSHNSGTAF  600
MTDHSTSTEV PQGMRPASLG VQKQLGLSHP STTEPAFTGN KAGCRLFGFS LTEGKNVGNT  660
DKASPATTPI NAGTTSVLSS NSGLRCPLKS PLMSKVVGSN CTKGAVQYRF ANCSTYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein