PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003207.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 723aa MW: 78903.5 Da PI: 8.0809

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	152	253	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023003207.1 152 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 243 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023003207.1 244 GELRLGIRRA 253 999**996 PP
2	Auxin_resp	106	4.4e-35	278	359	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023003207.1 278 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 359 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN 120 EPIEHKMQEE MTNDSEGEDF EGSEKTTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP 180 LDYSQQRPSQ ELVAKDLLGI KWKFRHIYRG QPRRHLLTTG WSAFVNKKRL VSGDAVLFLR 240 GNDGELRLGI RRAAQLKGSY AFSNICSQQL NSSSIMDVVN AISSKTSFSV YYNPRATSSQ 300 FVLPFHKFLK SINHSFSAGM RFSLSFETDD AADRRCTGRI TGVGDVDPIR WPGSRWRSLV 360 VRWDDVETKR HGRVSPWEIE PSGSVSVASN LVPPGLKRTR IGLSPTELEF PAPNGIGASD 420 FGESLRFQKV LQGQEILGYS TPINGDDNVR HPPEKRRSFP GVHGSGIALM RNGPRIPVTN 480 SETPSRGFMF NESFQFHKVL QGQEIYPSPF FGIATATNEV KASDGYGPVD SVPLSRSKDG 540 WPMTMQSENF LTRSSIPSVQ VSSPSSVFMF QQSMVPVQSF NSYNRGNFTE QRTMNKSTSH 600 NSGTAFMTDH STSTEVPQGM RPASLGVQKQ LGLSHPSTTE PAFTGNKAGC RLFGFSLTEG 660 KNVGNTDKAS PATTPINAGT TSVLSSNSGL RCPLKSPLMS KVVGSNCTKG AVQYRFANCS 720 TYY

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN  120
EPIEHKMQEE MTNDSEGEDF EGSEKTTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP  180
LDYSQQRPSQ ELVAKDLLGI KWKFRHIYRG QPRRHLLTTG WSAFVNKKRL VSGDAVLFLR  240
GNDGELRLGI RRAAQLKGSY AFSNICSQQL NSSSIMDVVN AISSKTSFSV YYNPRATSSQ  300
FVLPFHKFLK SINHSFSAGM RFSLSFETDD AADRRCTGRI TGVGDVDPIR WPGSRWRSLV  360
VRWDDVETKR HGRVSPWEIE PSGSVSVASN LVPPGLKRTR IGLSPTELEF PAPNGIGASD  420
FGESLRFQKV LQGQEILGYS TPINGDDNVR HPPEKRRSFP GVHGSGIALM RNGPRIPVTN  480
SETPSRGFMF NESFQFHKVL QGQEIYPSPF FGIATATNEV KASDGYGPVD SVPLSRSKDG  540
WPMTMQSENF LTRSSIPSVQ VSSPSSVFMF QQSMVPVQSF NSYNRGNFTE QRTMNKSTSH  600
NSGTAFMTDH STSTEVPQGM RPASLGVQKQ LGLSHPSTTE PAFTGNKAGC RLFGFSLTEG  660
KNVGNTDKAS PATTPINAGT TSVLSSNSGL RCPLKSPLMS KVVGSNCTKG AVQYRFANCS  720
TYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein