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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023003207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | ARF | ||||||||
Protein Properties | Length: 723aa MW: 78903.5 Da PI: 8.0809 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 1e-23 | 152 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023003207.1 152 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 243 99****************************963.3445679************************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023003207.1 244 GELRLGIRRA 253 999****996 PP | |||||||
2 | Auxin_resp | 106 | 4.4e-35 | 278 | 359 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023003207.1 278 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 359 689*****************************************************************************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence |
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN 120 EPIEHKMQEE MTNDSEGEDF EGSEKTTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP 180 LDYSQQRPSQ ELVAKDLLGI KWKFRHIYRG QPRRHLLTTG WSAFVNKKRL VSGDAVLFLR 240 GNDGELRLGI RRAAQLKGSY AFSNICSQQL NSSSIMDVVN AISSKTSFSV YYNPRATSSQ 300 FVLPFHKFLK SINHSFSAGM RFSLSFETDD AADRRCTGRI TGVGDVDPIR WPGSRWRSLV 360 VRWDDVETKR HGRVSPWEIE PSGSVSVASN LVPPGLKRTR IGLSPTELEF PAPNGIGASD 420 FGESLRFQKV LQGQEILGYS TPINGDDNVR HPPEKRRSFP GVHGSGIALM RNGPRIPVTN 480 SETPSRGFMF NESFQFHKVL QGQEIYPSPF FGIATATNEV KASDGYGPVD SVPLSRSKDG 540 WPMTMQSENF LTRSSIPSVQ VSSPSSVFMF QQSMVPVQSF NSYNRGNFTE QRTMNKSTSH 600 NSGTAFMTDH STSTEVPQGM RPASLGVQKQ LGLSHPSTTE PAFTGNKAGC RLFGFSLTEG 660 KNVGNTDKAS PATTPINAGT TSVLSSNSGL RCPLKSPLMS KVVGSNCTKG AVQYRFANCS 720 TYY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |