PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003207.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 723aa    MW: 78903.5 Da    PI: 8.0809
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23152253199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_023003207.1 152 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 243
                     99****************************963.3445679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_023003207.1 244 GELRLGIRRA 253
                     999****996 PP

2Auxin_resp1064.4e-35278359182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL
  XP_023003207.1 278 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 359
                     689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN  120
EPIEHKMQEE MTNDSEGEDF EGSEKTTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP  180
LDYSQQRPSQ ELVAKDLLGI KWKFRHIYRG QPRRHLLTTG WSAFVNKKRL VSGDAVLFLR  240
GNDGELRLGI RRAAQLKGSY AFSNICSQQL NSSSIMDVVN AISSKTSFSV YYNPRATSSQ  300
FVLPFHKFLK SINHSFSAGM RFSLSFETDD AADRRCTGRI TGVGDVDPIR WPGSRWRSLV  360
VRWDDVETKR HGRVSPWEIE PSGSVSVASN LVPPGLKRTR IGLSPTELEF PAPNGIGASD  420
FGESLRFQKV LQGQEILGYS TPINGDDNVR HPPEKRRSFP GVHGSGIALM RNGPRIPVTN  480
SETPSRGFMF NESFQFHKVL QGQEIYPSPF FGIATATNEV KASDGYGPVD SVPLSRSKDG  540
WPMTMQSENF LTRSSIPSVQ VSSPSSVFMF QQSMVPVQSF NSYNRGNFTE QRTMNKSTSH  600
NSGTAFMTDH STSTEVPQGM RPASLGVQKQ LGLSHPSTTE PAFTGNKAGC RLFGFSLTEG  660
KNVGNTDKAS PATTPINAGT TSVLSSNSGL RCPLKSPLMS KVVGSNCTKG AVQYRFANCS  720
TYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein