PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003206.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 724aa MW: 79030.7 Da PI: 8.2183

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	153	254	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023003206.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 244 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023003206.1 245 GELRLGIRRA 254 999**996 PP
2	Auxin_resp	106	4.5e-35	279	360	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023003206.1 279 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 360 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE 120 NEPIEHKMQE EMTNDSEGED FEGSEKTTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP 180 PLDYSQQRPS QELVAKDLLG IKWKFRHIYR GQPRRHLLTT GWSAFVNKKR LVSGDAVLFL 240 RGNDGELRLG IRRAAQLKGS YAFSNICSQQ LNSSSIMDVV NAISSKTSFS VYYNPRATSS 300 QFVLPFHKFL KSINHSFSAG MRFSLSFETD DAADRRCTGR ITGVGDVDPI RWPGSRWRSL 360 VVRWDDVETK RHGRVSPWEI EPSGSVSVAS NLVPPGLKRT RIGLSPTELE FPAPNGIGAS 420 DFGESLRFQK VLQGQEILGY STPINGDDNV RHPPEKRRSF PGVHGSGIAL MRNGPRIPVT 480 NSETPSRGFM FNESFQFHKV LQGQEIYPSP FFGIATATNE VKASDGYGPV DSVPLSRSKD 540 GWPMTMQSEN FLTRSSIPSV QVSSPSSVFM FQQSMVPVQS FNSYNRGNFT EQRTMNKSTS 600 HNSGTAFMTD HSTSTEVPQG MRPASLGVQK QLGLSHPSTT EPAFTGNKAG CRLFGFSLTE 660 GKNVGNTDKA SPATTPINAG TTSVLSSNSG LRCPLKSPLM SKVVGSNCTK GAVQYRFANC 720 STYY

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE  120
NEPIEHKMQE EMTNDSEGED FEGSEKTTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
PLDYSQQRPS QELVAKDLLG IKWKFRHIYR GQPRRHLLTT GWSAFVNKKR LVSGDAVLFL  240
RGNDGELRLG IRRAAQLKGS YAFSNICSQQ LNSSSIMDVV NAISSKTSFS VYYNPRATSS  300
QFVLPFHKFL KSINHSFSAG MRFSLSFETD DAADRRCTGR ITGVGDVDPI RWPGSRWRSL  360
VVRWDDVETK RHGRVSPWEI EPSGSVSVAS NLVPPGLKRT RIGLSPTELE FPAPNGIGAS  420
DFGESLRFQK VLQGQEILGY STPINGDDNV RHPPEKRRSF PGVHGSGIAL MRNGPRIPVT  480
NSETPSRGFM FNESFQFHKV LQGQEIYPSP FFGIATATNE VKASDGYGPV DSVPLSRSKD  540
GWPMTMQSEN FLTRSSIPSV QVSSPSSVFM FQQSMVPVQS FNSYNRGNFT EQRTMNKSTS  600
HNSGTAFMTD HSTSTEVPQG MRPASLGVQK QLGLSHPSTT EPAFTGNKAG CRLFGFSLTE  660
GKNVGNTDKA SPATTPINAG TTSVLSSNSG LRCPLKSPLM SKVVGSNCTK GAVQYRFANC  720
STYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein