PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023002912.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 372aa MW: 42059.6 Da PI: 6.266

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023002912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.3	4.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_023002912.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.6	2.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_023002912.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEVKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MGRTPCCEKD GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEVKNYWNT HIRKRLLRMG 120 IDPATHSPRL DLLDLSSILG PSFYNPNSQM NSFSRLIGIH NSINPELLRL ASSFLSSNNV 180 SQCQSPNFLL QNVENHEQSH MVSQLQLLPH SHHQIDQSAA TLPPLHEVSA CCSRSTATSC 240 GGETQYLEPD YYSSGHQLLL PSNFSDSYSQ YCPHPNEDSS NNNVNGFNYP SSEYVHFPSF 300 DVYGSIEEPL QQIMSPSPET STLNSSPTPL NSNSTYFSSG NGNGTDQDER ESYCSYNLKF 360 EIPDLLDVNP FM

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MGRTPCCEKD GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEVKNYWNT HIRKRLLRMG  120
IDPATHSPRL DLLDLSSILG PSFYNPNSQM NSFSRLIGIH NSINPELLRL ASSFLSSNNV  180
SQCQSPNFLL QNVENHEQSH MVSQLQLLPH SHHQIDQSAA TLPPLHEVSA CCSRSTATSC  240
GGETQYLEPD YYSSGHQLLL PSNFSDSYSQ YCPHPNEDSS NNNVNGFNYP SSEYVHFPSF  300
DVYGSIEEPL QQIMSPSPET STLNSSPTPL NSNSTYFSSG NGNGTDQDER ESYCSYNLKF  360
EIPDLLDVNP FM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-106	MYB family protein