PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023001892.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 544aa    MW: 59739.5 Da    PI: 7.8243
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023001892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.13e-22106207199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +a++          ++ +  tl+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF   ++ 
  XP_023001892.1 106 FAKILTSSDANNGGGFSVPRCCADSVfpplnyrADPPVQ--TLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFA--KNL 196
                     89*********************999****997555555..8************************************************..678 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ ++v+++r+
  XP_023001892.1 197 RGDMFVGIRRA 207
                     8889****997 PP
2Auxin_resp81.71.7e-27261343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a++ ++Fe vY+Pra++seFvv+vekv+++ + ++  G+R+kma+ete s+ + ++Gtv++ s  +   W +S+Wr+L+
  XP_023001892.1 261 AAELAAQFKPFELVYYPRAGRSEFVVQVEKVNESKNYQWYSGTRVKMAMETEYSKMTWYQGTVTSASVPEHGPWMGSPWRMLE 343
                     67889999**********************************************99999**********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MNRQLWQAFA GKSVHTHTVG SEVYYFVQGH VEQATYIPSL SQSVLSNPAT KCLVTSTDFH  60
ADSLSDEVCI KLNLHPIRSG QDESVLVSRF GRCDDNGGER NKIESFAKIL TSSDANNGGG  120
FSVPRCCADS VFPPLNYRAD PPVQTLSITD VHGVVWNFRH IYRGTPRRHL LTTGWSKFVN  180
HKKLIAGDSV VFAKNLRGDM FVGIRRASTS ITRAIAGGGR WNSQNGGARC SLEKNCSGDG  240
GTKVFSRRNI GKLPAEAVAN AAELAAQFKP FELVYYPRAG RSEFVVQVEK VNESKNYQWY  300
SGTRVKMAME TEYSKMTWYQ GTVTSASVPE HGPWMGSPWR MLEVTWDEID ALQSAKYVSP  360
WEVELATPTP PIQPPLHPAK KFRGLPKSGM LNGEAELFSP LMNFVDSTME QFNPSLLNLN  420
SFPACMQGAR QKLFCESRLF NPCKEITSLT CDESSMSELN AAKTMQMVST DLLIGSVQFD  480
TLSPDSQASV LSFATGTAEN QNCCNSAKAG VNSIQLFGQV IYMNPPVENG VSTNDGGKNP  540
NQSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-138ARF family protein